Detailed information NTG0831560

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: QMK52_RS03145
• Genome accession: NZ_CP125376
• Coordinates: 731577..732443 (+)
• Length: 288 a.a.
• NCBI ID: WP_194440116.1
• Uniprot ID: A0A7S7S4Z1
• Organism: Pseudomonas sp. P9_2
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 726577..737443

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
QMK52_RS03120 (QMK52_03120)	nadC	728244..729092 (+)	849	WP_005784689.1	carboxylating nicotinate-nucleotide diphosphorylase	-
QMK52_RS03125 (QMK52_03125)	-	729167..729472 (-)	306	WP_005784687.1	DUF6388 family protein	-
QMK52_RS03135 (QMK52_03135)	-	729759..730172 (-)	414	WP_005784685.1	pilin	-
QMK52_RS03140 (QMK52_03140)	pilC	730372..731580 (+)	1209	WP_194440117.1	type II secretion system F family protein	Machinery gene
QMK52_RS03145 (QMK52_03145)	pilD	731577..732443 (+)	867	WP_194440116.1	prepilin peptidase	Machinery gene
QMK52_RS03150 (QMK52_03150)	coaE	732440..733063 (+)	624	WP_032877844.1	dephospho-CoA kinase	-
QMK52_RS03155 (QMK52_03155)	yacG	733060..733260 (+)	201	WP_005784677.1	DNA gyrase inhibitor YacG	-
QMK52_RS03160 (QMK52_03160)	-	733257..733472 (-)	216	WP_003171680.1	hypothetical protein	-
QMK52_RS03165 (QMK52_03165)	-	733539..734228 (-)	690	WP_005784673.1	energy-coupling factor ABC transporter permease	-
QMK52_RS03170 (QMK52_03170)	-	734503..735132 (+)	630	WP_003188431.1	DUF1780 domain-containing protein	-
QMK52_RS03175 (QMK52_03175)	-	735186..735359 (+)	174	WP_005784671.1	DUF3094 family protein	-
QMK52_RS03180 (QMK52_03180)	-	735420..736718 (+)	1299	WP_005784669.1	NAD(P)/FAD-dependent oxidoreductase	-

Sequence

Protein

• Length: 288 a.a.
• Molecular weight: 31948.35 Da
• Isoelectric Point: 7.8587

>NTDB_id=831560 QMK52_RS03145 WP_194440116.1 731577..732443(+) (pilD) [Pseudomonas sp. P9_2]
MSLLLSEQPWAFACMALVLGLIIGSFINVLVWRLPKMLEREWRAQAHEVLGLPTEPAGPVYNLMRPNSCCPRCNQPIRPW
ENIPLLSFLMLRGRCAHCREPISVRYPLTEVTCALITAAVAWHFGFGWQAAAVMLLSWGLLAMSLIDLDHQLLPDVLVLP
LLWLGLVLNSADLLAILPDALWGAVIGYMSLWSVFWLFKLATGKDGMGHGDFKLLALLGAWGGWQILPMTLLMASLMGVF
AGLILLRLRKVQTSTPMPFGPCLAIAGWIALLWGGQITDFYLQSVGFR

Nucleotide

• Length: 867 bp

>NTDB_id=831560 QMK52_RS03145 WP_194440116.1 731577..732443(+) (pilD) [Pseudomonas sp. P9_2]
TTGAGCCTGCTGCTGAGCGAGCAGCCCTGGGCGTTTGCCTGCATGGCACTGGTGCTCGGCCTGATCATCGGCAGTTTCAT
CAACGTGCTGGTCTGGCGCCTGCCCAAAATGCTCGAACGCGAATGGCGTGCCCAGGCGCATGAGGTCCTCGGCCTGCCAA
CCGAGCCCGCCGGGCCGGTGTACAACCTGATGCGCCCGAACTCCTGCTGTCCGCGCTGCAACCAGCCGATTCGGCCCTGG
GAAAATATCCCGCTGCTCAGCTTCCTGATGCTCAGGGGTCGTTGCGCCCATTGCCGTGAGCCCATCAGCGTCCGCTATCC
CCTGACCGAAGTGACGTGCGCGCTGATCACCGCCGCCGTTGCCTGGCATTTCGGCTTCGGCTGGCAAGCCGCTGCGGTGA
TGTTGCTGAGCTGGGGCTTGCTGGCCATGAGCCTGATTGACCTGGACCACCAATTGCTGCCGGATGTGCTGGTACTGCCG
CTGCTCTGGCTGGGGCTGGTCCTCAACAGCGCTGACCTGCTGGCAATACTGCCCGATGCACTGTGGGGCGCGGTTATTGG
CTACATGAGCCTATGGAGCGTGTTCTGGCTATTCAAGCTGGCTACCGGCAAGGATGGCATGGGCCATGGCGATTTCAAGT
TATTGGCATTGCTGGGGGCCTGGGGGGGCTGGCAGATCCTGCCAATGACGTTGCTGATGGCCTCGCTGATGGGCGTGTTT
GCAGGGCTGATCCTGCTGCGCTTGCGCAAGGTCCAAACGTCGACGCCGATGCCCTTTGGGCCGTGCCTGGCAATTGCCGG
CTGGATTGCATTGCTCTGGGGTGGTCAAATAACCGACTTCTATTTGCAGTCTGTCGGTTTCAGATGA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (134-243)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (18-124)

3D structure

• AlphaFold DB: A0A7S7S4Z1

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	52.857	97.222	0.514
pilD	Vibrio campbellii strain DS40M4	49.462	96.875	0.479
pilD	Acinetobacter nosocomialis M2	47.253	94.792	0.448
pilD	Acinetobacter baumannii D1279779	46.739	95.833	0.448
pilD	Neisseria gonorrhoeae MS11	46.094	88.889	0.41