Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYA   Type   Machinery gene
Locus tag   QLH56_RS04240 Genome accession   NZ_CP125107
Coordinates   905259..906200 (-) Length   313 a.a.
NCBI ID   WP_003098801.1    Uniprot ID   -
Organism   Streptococcus iniae strain DFSM220524     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 900259..911200
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QLH56_RS04200 (QLH56_04200) - 900289..901485 (-) 1197 WP_003098816.1 acetate kinase -
  QLH56_RS04205 (QLH56_04205) comYH 901542..902498 (-) 957 WP_003098815.1 class I SAM-dependent methyltransferase Machinery gene
  QLH56_RS04210 (QLH56_04210) comGG 902560..902913 (-) 354 WP_003098812.1 competence type IV pilus minor pilin ComGG -
  QLH56_RS04215 (QLH56_04215) comGF 902903..903283 (-) 381 WP_003098811.1 competence type IV pilus minor pilin ComGF -
  QLH56_RS04220 (QLH56_04220) comGE 903312..903569 (-) 258 WP_003098809.1 competence type IV pilus minor pilin ComGE -
  QLH56_RS04225 (QLH56_04225) comGD 903577..904005 (-) 429 WP_003098807.1 competence type IV pilus minor pilin ComGD -
  QLH56_RS04230 (QLH56_04230) comGC/cglC 903965..904291 (-) 327 WP_003098806.1 competence type IV pilus major pilin ComGC Machinery gene
  QLH56_RS04235 (QLH56_04235) comYB 904292..905308 (-) 1017 WP_003098804.1 competence type IV pilus assembly protein ComGB Machinery gene
  QLH56_RS04240 (QLH56_04240) comYA 905259..906200 (-) 942 WP_003098801.1 competence type IV pilus ATPase ComGA Machinery gene
  QLH56_RS04245 (QLH56_04245) - 906261..906626 (-) 366 WP_003098799.1 DUF1033 family protein -
  QLH56_RS04250 (QLH56_04250) rpoC 906745..910377 (-) 3633 WP_003098797.1 DNA-directed RNA polymerase subunit beta' -

Sequence

Protein


Download         Length: 313 a.a.        Molecular weight: 35927.07 Da        Isoelectric Point: 7.4276

>NTDB_id=829956 QLH56_RS04240 WP_003098801.1 905259..906200(-) (comYA) [Streptococcus iniae strain DFSM220524]
MIQSLGKEVIKMADDLKAQDIYIIPEGDDYKIHMRIDGERRRIESFDGAQMPQLISHFKYLSGMNVGEKRRCQLGACDYQ
YGAKNDISLRLSTVGDYRGKESLVIRLLHHQNRSLSFWFDREKELAEQVTRRGLYLFSGPVGSGKTSLMYQLLAKDSKQK
QIITIEDPVEIKDTRMLQLQVNDSIGTTYDNLIKLSLRHRPDVLIIGEIRDTETARAAIRASLTGSVVFSTIHAKSIKGV
YERLIELGISREEVTQTLQLVVYQRLLGGRGLIDFTRKGFENYQQEQWNKDLDQLFADGYLTEQEIQTEKIIS

Nucleotide


Download         Length: 942 bp        

>NTDB_id=829956 QLH56_RS04240 WP_003098801.1 905259..906200(-) (comYA) [Streptococcus iniae strain DFSM220524]
ATGATTCAAAGCTTAGGAAAAGAAGTGATTAAAATGGCAGATGACTTGAAGGCTCAGGACATATATATTATTCCAGAGGG
CGATGATTACAAGATTCATATGCGTATTGATGGAGAAAGAAGACGCATTGAATCTTTTGATGGCGCACAGATGCCTCAAC
TCATCAGTCACTTTAAATATCTATCGGGAATGAATGTTGGCGAAAAACGTCGATGCCAACTTGGCGCCTGTGATTACCAA
TATGGTGCTAAAAATGACATATCGCTTCGACTATCAACAGTTGGAGATTATCGTGGGAAGGAAAGTTTAGTAATCAGGCT
TTTACACCACCAAAACAGGTCCTTATCTTTTTGGTTTGATAGGGAAAAGGAATTGGCCGAGCAAGTCACCAGACGAGGAC
TTTATTTATTTTCAGGCCCCGTTGGTTCCGGTAAAACGAGTTTAATGTATCAACTTCTAGCAAAGGATTCTAAACAAAAG
CAAATCATCACTATTGAAGATCCCGTTGAGATTAAGGACACAAGAATGCTACAGTTGCAAGTAAATGACAGTATTGGAAC
GACATATGATAATTTAATTAAATTATCTTTGCGTCATCGTCCAGATGTTCTCATTATTGGTGAAATTAGAGACACTGAGA
CAGCTAGAGCAGCCATTAGAGCAAGTTTAACTGGTAGTGTCGTCTTTTCCACCATACATGCTAAAAGCATCAAGGGTGTC
TATGAGAGATTAATTGAATTAGGAATCTCTAGAGAAGAAGTGACACAAACACTTCAACTTGTTGTTTATCAACGGCTACT
TGGTGGTCGAGGCTTAATTGACTTTACACGAAAGGGGTTTGAAAACTATCAACAAGAGCAGTGGAATAAAGACTTGGATC
AACTTTTTGCGGATGGATATCTCACTGAGCAAGAAATCCAAACAGAGAAAATTATCAGCTAA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(14-266)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYA Streptococcus mutans UA140

62.058

99.361

0.617
  comYA Streptococcus mutans UA159

62.058

99.361

0.617
  comGA/cglA Streptococcus sobrinus strain NIDR 6715-7

61.29

99.042

0.607
  comGA/cglA/cilD Streptococcus mitis NCTC 12261

59.807

99.361

0.594
  comGA/cglA/cilD Streptococcus pneumoniae D39

59.486

99.361

0.591
  comGA/cglA/cilD Streptococcus pneumoniae Rx1

59.486

99.361

0.591
  comGA/cglA/cilD Streptococcus pneumoniae R6

59.486

99.361

0.591
  comGA/cglA/cilD Streptococcus pneumoniae TIGR4

59.486

99.361

0.591
  comYA Streptococcus gordonii str. Challis substr. CH1

58.842

99.361

0.585
  comGA Lactococcus lactis subsp. cremoris KW2

53.376

99.361

0.53