Detailed information NTG0829955

Bioinformatically predicted

Overview

• Name: comYB
• Type: Machinery gene
• Locus tag: QLH56_RS04235
• Genome accession: NZ_CP125107
• Coordinates: 904292..905308 (-)
• Length: 338 a.a.
• NCBI ID: WP_003098804.1
• Uniprot ID: -
• Organism: Streptococcus iniae strain DFSM220524
• Function: dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 899292..910308

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
QLH56_RS04190 (QLH56_04190)	-	899498..899950 (-)	453	WP_003098820.1	hypothetical protein	-
QLH56_RS04195 (QLH56_04195)	-	899963..900166 (-)	204	WP_003098819.1	helix-turn-helix transcriptional regulator	-
QLH56_RS04200 (QLH56_04200)	-	900289..901485 (-)	1197	WP_003098816.1	acetate kinase	-
QLH56_RS04205 (QLH56_04205)	comYH	901542..902498 (-)	957	WP_003098815.1	class I SAM-dependent methyltransferase	Machinery gene
QLH56_RS04210 (QLH56_04210)	comGG	902560..902913 (-)	354	WP_003098812.1	competence type IV pilus minor pilin ComGG	-
QLH56_RS04215 (QLH56_04215)	comGF	902903..903283 (-)	381	WP_003098811.1	competence type IV pilus minor pilin ComGF	-
QLH56_RS04220 (QLH56_04220)	comGE	903312..903569 (-)	258	WP_003098809.1	competence type IV pilus minor pilin ComGE	-
QLH56_RS04225 (QLH56_04225)	comGD	903577..904005 (-)	429	WP_003098807.1	competence type IV pilus minor pilin ComGD	-
QLH56_RS04230 (QLH56_04230)	comGC/cglC	903965..904291 (-)	327	WP_003098806.1	competence type IV pilus major pilin ComGC	Machinery gene
QLH56_RS04235 (QLH56_04235)	comYB	904292..905308 (-)	1017	WP_003098804.1	competence type IV pilus assembly protein ComGB	Machinery gene
QLH56_RS04240 (QLH56_04240)	comYA	905259..906200 (-)	942	WP_003098801.1	competence type IV pilus ATPase ComGA	Machinery gene
QLH56_RS04245 (QLH56_04245)	-	906261..906626 (-)	366	WP_003098799.1	DUF1033 family protein	-

Sequence

Protein

• Length: 338 a.a.
• Molecular weight: 39194.38 Da
• Isoelectric Point: 9.6521

>NTDB_id=829955 QLH56_RS04235 WP_003098804.1 904292..905308(-) (comYB) [Streptococcus iniae strain DFSM220524]
MDISLSKKSKQRKLSAKKQYQLMQLFHNLFASGFSLSEIVAFLEKSHLLEAKYLDRIKENLISGRSLAEMTRSLGYPDSI
VTQISFADIHGNTKESLFKIMHYLDKVAQVRKKTLEVLTYPLILLSFLIAIMFGLRHYLLPQIEESNGLTQFLTYFPLVF
LIFLILGLLLTFYLSIRWRKHSQLKQVKQFSRIPFLKDYISLYITAYFAREWGSLMGQGLELSSILTVMAKEQSPLVKEI
GQDMQAYFLEGGALHDKVLQYPFFQKELSLMIEYGDIKAKLGQELEIYAQLTWERFFSRLFQATQWIQPIIFLFVALIIV
CIYAAMLLPMYHSIGGSI

Nucleotide

• Length: 1017 bp

>NTDB_id=829955 QLH56_RS04235 WP_003098804.1 904292..905308(-) (comYB) [Streptococcus iniae strain DFSM220524]
ATGGATATCTCACTGAGCAAGAAATCCAAACAGAGAAAATTATCAGCTAAAAAGCAGTATCAATTAATGCAACTCTTTCA
TAATTTATTTGCAAGTGGTTTTAGCTTATCTGAAATAGTGGCATTTTTAGAAAAAAGTCACTTATTGGAAGCAAAATACC
TTGATAGAATAAAAGAAAACCTCATCAGTGGACGAAGTTTAGCAGAAATGACTAGAAGTTTAGGTTATCCTGACAGTATT
GTAACGCAAATTAGTTTTGCAGATATTCATGGCAATACCAAGGAAAGCTTGTTTAAAATTATGCATTACCTTGATAAAGT
GGCACAAGTCAGGAAAAAAACATTAGAAGTCCTAACTTATCCTCTTATTTTGCTTAGTTTTTTAATAGCCATCATGTTTG
GCTTACGCCATTATCTGCTTCCTCAAATAGAGGAGTCTAATGGGCTTACTCAATTTTTGACTTACTTCCCTTTAGTTTTT
TTGATTTTCTTAATATTGGGATTGCTACTCACATTTTACTTGAGCATTAGGTGGCGAAAACACTCACAATTAAAACAAGT
CAAGCAGTTTAGTCGGATACCTTTTTTAAAAGACTATATTAGCCTATATATAACTGCCTATTTTGCGCGTGAATGGGGAA
GTTTAATGGGACAAGGCCTTGAGTTGAGTTCAATACTAACCGTTATGGCAAAAGAACAATCTCCTCTGGTAAAAGAAATC
GGCCAAGATATGCAGGCCTATTTTTTAGAGGGTGGTGCTTTGCATGACAAAGTGTTACAATACCCATTTTTTCAAAAGGA
ATTAAGCTTAATGATTGAATATGGAGATATCAAGGCTAAATTAGGTCAAGAATTAGAAATTTATGCTCAACTAACATGGG
AAAGATTCTTTAGCCGCTTATTTCAAGCGACACAATGGATTCAACCTATTATATTCTTATTTGTTGCACTTATTATTGTG
TGCATTTACGCGGCAATGCTTTTGCCCATGTATCATTCAATTGGAGGTTCTATATAA

Domains

Predicted by InterproScan.

• Type II secretion system (T2SS), protein F (T2SSF) (24-141)

• Type II secretion system (T2SS), protein F (T2SSF) (208-329)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comYB	Streptococcus mutans UA140	52.252	98.521	0.515
comYB	Streptococcus mutans UA159	52.252	98.521	0.515
comGB/cglB	Streptococcus mitis NCTC 12261	48.673	100	0.488
comGB/cglB	Streptococcus mitis SK321	48.204	98.817	0.476
comYB	Streptococcus gordonii str. Challis substr. CH1	48.048	98.521	0.473
comGB/cglB	Streptococcus pneumoniae Rx1	46.407	98.817	0.459
comGB/cglB	Streptococcus pneumoniae D39	46.407	98.817	0.459
comGB/cglB	Streptococcus pneumoniae R6	46.407	98.817	0.459
comGB/cglB	Streptococcus pneumoniae TIGR4	46.407	98.817	0.459
comGB	Lactococcus lactis subsp. cremoris KW2	43.544	98.521	0.429