Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA/celA/cilE   Type   Machinery gene
Locus tag   H7679_RS06315 Genome accession   NZ_AP023392
Coordinates   1283005..1283667 (-) Length   220 a.a.
NCBI ID   WP_024396038.1    Uniprot ID   -
Organism   Streptococcus suis strain DAT300     
Function   dsDNA binding to the cell surface (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1278005..1288667
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H7679_RS06300 (DAT300_12030) - 1278893..1279720 (-) 828 WP_024396041.1 hypothetical protein -
  H7679_RS06305 (DAT300_12040) - 1279814..1280470 (-) 657 WP_024396040.1 CBS domain-containing protein -
  H7679_RS11420 - 1280653..1280775 (-) 123 Protein_1207 IS982 family transposase -
  H7679_RS06310 (DAT300_12050) comEC/celB 1280784..1283021 (-) 2238 WP_024396039.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  H7679_RS06315 (DAT300_12060) comEA/celA/cilE 1283005..1283667 (-) 663 WP_024396038.1 helix-hairpin-helix domain-containing protein Machinery gene
  H7679_RS06320 (DAT300_12070) - 1283734..1284480 (-) 747 WP_014735985.1 lysophospholipid acyltransferase family protein -
  H7679_RS06325 (DAT300_12080) - 1284627..1286072 (+) 1446 WP_184495576.1 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L- lysine ligase -
  H7679_RS06330 (DAT300_12090) - 1286487..1287272 (+) 786 WP_014636900.1 ABC transporter ATP-binding protein -
  H7679_RS06335 (DAT300_12100) - 1287285..1288214 (+) 930 WP_015646964.1 ABC transporter substrate-binding protein -

Sequence

Protein


Download         Length: 220 a.a.        Molecular weight: 23221.88 Da        Isoelectric Point: 4.1381

>NTDB_id=82958 H7679_RS06315 WP_024396038.1 1283005..1283667(-) (comEA/celA/cilE) [Streptococcus suis strain DAT300]
MDTIKTYIEMLKEYKWQIALPAVAGLLMGTFLIFSQPAKSDQTGLTDFPQTAQTSSSSDLGEETSTEASEEPSQLVVDVK
GAVVKPGLYTLEAGARVNDAVEAAGGLTSQANPKSINLAQKLSDEAVVYVASKDENISVVTSTATSSAMSQEEKNTSLVN
LNTATEADLQTISGIGAKRAADIIAYREANGGFKSVDDLNNVSGIGDKTMESIRPYVTVD

Nucleotide


Download         Length: 663 bp        

>NTDB_id=82958 H7679_RS06315 WP_024396038.1 1283005..1283667(-) (comEA/celA/cilE) [Streptococcus suis strain DAT300]
ATGGATACGATTAAAACTTATATAGAAATGCTTAAAGAATACAAGTGGCAAATTGCTCTGCCAGCAGTGGCTGGCTTGCT
AATGGGGACGTTCTTAATCTTCAGTCAACCAGCCAAGTCTGACCAGACAGGACTGACAGATTTTCCGCAGACCGCACAAA
CTTCTAGCAGCTCTGACTTGGGCGAGGAAACCAGTACAGAAGCAAGTGAAGAGCCCAGCCAGCTGGTCGTTGATGTCAAA
GGAGCGGTAGTAAAACCAGGACTCTACACTTTAGAAGCTGGTGCGCGTGTTAATGATGCAGTTGAAGCAGCTGGCGGCTT
GACCAGTCAGGCAAACCCAAAGTCTATCAATCTGGCTCAGAAGCTCAGCGATGAGGCGGTGGTCTATGTGGCCAGCAAGG
ACGAAAATATCTCGGTGGTGACCAGCACGGCTACCAGCTCTGCTATGTCCCAAGAAGAAAAAAACACCAGTCTAGTCAAT
CTGAATACGGCGACCGAGGCTGACTTGCAGACTATTTCTGGTATTGGTGCCAAGCGAGCGGCGGACATTATCGCCTATCG
TGAGGCCAATGGCGGCTTCAAATCAGTGGATGACCTCAACAATGTTTCGGGCATTGGCGACAAGACCATGGAAAGCATTC
GACCTTATGTCACGGTCGATTAA

Domains

Predicted by InterproScan.

SLBB domain (SLBB)

(76-130)

Helix-hairpin-helix motif (HHH_3)

(155-218)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA/celA/cilE Streptococcus pneumoniae TIGR4

50

99.091

0.495
  comEA/celA/cilE Streptococcus pneumoniae Rx1

49.315

99.545

0.491
  comEA/celA/cilE Streptococcus pneumoniae D39

49.315

99.545

0.491
  comEA/celA/cilE Streptococcus pneumoniae R6

49.315

99.545

0.491
  comEA/celA/cilE Streptococcus mitis NCTC 12261

48.402

99.545

0.482
  comEA/celA/cilE Streptococcus mitis SK321

45.946

100

0.464
  comEA Streptococcus thermophilus LMD-9

60.759

71.818

0.436
  comEA Lactococcus lactis subsp. cremoris KW2

38.053

100

0.391

Multiple sequence alignment