Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | QLQ42_RS01950 | Genome accession | NZ_CP124893 |
| Coordinates | 382497..382955 (+) | Length | 152 a.a. |
| NCBI ID | WP_002365911.1 | Uniprot ID | Q8VT46 |
| Organism | Enterococcus faecalis strain EfsC123 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| ICE | 374085..433230 | 382497..382955 | within | 0 |
Gene organization within MGE regions
Location: 374085..433230
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| QLQ42_RS01885 (QLQ42_01885) | prgU | 374638..374994 (+) | 357 | WP_010714280.1 | pheromone response system RNA-binding regulator PrgU | - |
| QLQ42_RS01890 (QLQ42_01890) | - | 375097..375402 (+) | 306 | WP_224567327.1 | hypothetical protein | - |
| QLQ42_RS01895 (QLQ42_01895) | - | 375548..375808 (+) | 261 | WP_002370667.1 | hypothetical protein | - |
| QLQ42_RS01900 (QLQ42_01900) | - | 375819..376697 (+) | 879 | WP_002377931.1 | hypothetical protein | - |
| QLQ42_RS01905 (QLQ42_01905) | - | 376717..377577 (+) | 861 | WP_010710128.1 | LPXTG cell wall anchor domain-containing protein | - |
| QLQ42_RS01910 (QLQ42_01910) | - | 377603..378873 (+) | 1271 | Protein_354 | CHAP domain-containing protein | - |
| QLQ42_RS01915 (QLQ42_01915) | - | 378876..379493 (+) | 618 | WP_002377936.1 | hypothetical protein | - |
| QLQ42_RS01920 (QLQ42_01920) | - | 379477..379893 (+) | 417 | WP_002401419.1 | thioredoxin domain-containing protein | - |
| QLQ42_RS01925 (QLQ42_01925) | - | 379893..380207 (+) | 315 | WP_002360796.1 | hypothetical protein | - |
| QLQ42_RS01930 (QLQ42_01930) | - | 380200..381234 (+) | 1035 | WP_002403100.1 | conjugal transfer protein | - |
| QLQ42_RS01935 (QLQ42_01935) | - | 381239..381499 (+) | 261 | WP_010706916.1 | hypothetical protein | - |
| QLQ42_RS01940 (QLQ42_01940) | - | 381499..381888 (+) | 390 | WP_002360791.1 | TcpE family conjugal transfer membrane protein | - |
| QLQ42_RS01945 (QLQ42_01945) | - | 381920..382402 (+) | 483 | WP_002377938.1 | hypothetical protein | - |
| QLQ42_RS01950 (QLQ42_01950) | ssb | 382497..382955 (+) | 459 | WP_002365911.1 | single-stranded DNA-binding protein | Machinery gene |
| QLQ42_RS01955 (QLQ42_01955) | - | 383060..385552 (+) | 2493 | WP_002377939.1 | ATP-binding protein | - |
| QLQ42_RS01960 (QLQ42_01960) | - | 385509..385907 (+) | 399 | WP_002370287.1 | DUF4923 family protein | - |
| QLQ42_RS01965 (QLQ42_01965) | - | 385920..388265 (+) | 2346 | WP_002377940.1 | MAEBL family membrane protein | - |
| QLQ42_RS01970 (QLQ42_01970) | - | 388252..390510 (+) | 2259 | WP_010710132.1 | TraM recognition domain-containing protein | - |
| QLQ42_RS01975 (QLQ42_01975) | - | 391033..391818 (+) | 786 | WP_002360778.1 | replication-relaxation family protein | - |
| QLQ42_RS01980 (QLQ42_01980) | - | 391824..392312 (+) | 489 | WP_010710133.1 | hypothetical protein | - |
| QLQ42_RS01985 (QLQ42_01985) | - | 392904..393170 (+) | 267 | WP_002377947.1 | hypothetical protein | - |
| QLQ42_RS01990 (QLQ42_01990) | - | 393203..393703 (+) | 501 | WP_002360775.1 | DnaJ domain-containing protein | - |
| QLQ42_RS01995 (QLQ42_01995) | - | 393716..393964 (+) | 249 | WP_002360773.1 | DUF3850 domain-containing protein | - |
| QLQ42_RS02000 (QLQ42_02000) | - | 394040..394456 (+) | 417 | WP_010710134.1 | single-stranded DNA-binding protein | - |
| QLQ42_RS02005 (QLQ42_02005) | - | 394480..395064 (+) | 585 | WP_002377949.1 | thermonuclease family protein | - |
| QLQ42_RS02010 (QLQ42_02010) | - | 395175..395441 (+) | 267 | WP_002369771.1 | type II toxin-antitoxin system RelB/DinJ family antitoxin | - |
| QLQ42_RS02015 (QLQ42_02015) | - | 395434..395709 (+) | 276 | WP_002360769.1 | type II toxin-antitoxin system YafQ family toxin | - |
| QLQ42_RS02020 (QLQ42_02020) | - | 395900..396544 (-) | 645 | WP_002377952.1 | IS6 family transposase | - |
| QLQ42_RS02025 (QLQ42_02025) | - | 396677..397559 (+) | 883 | Protein_377 | IS256 family transposase | - |
| QLQ42_RS02030 (QLQ42_02030) | - | 397864..398901 (-) | 1038 | WP_002355369.1 | PTS sugar transporter subunit IIC | - |
| QLQ42_RS02035 (QLQ42_02035) | - | 398927..399865 (-) | 939 | WP_002370935.1 | 2-dehydropantoate 2-reductase | - |
| QLQ42_RS02040 (QLQ42_02040) | - | 399993..400262 (-) | 270 | Protein_380 | LPXTG cell wall anchor domain-containing protein | - |
| QLQ42_RS02045 (QLQ42_02045) | - | 400352..400537 (+) | 186 | WP_282896948.1 | hypothetical protein | - |
| QLQ42_RS02050 (QLQ42_02050) | - | 400569..401177 (+) | 609 | Protein_382 | IS6 family transposase | - |
| QLQ42_RS02055 (QLQ42_02055) | bsh | 401846..402820 (-) | 975 | WP_002355428.1 | choloylglycine hydrolase | - |
| QLQ42_RS02060 (QLQ42_02060) | - | 403044..403688 (+) | 645 | WP_002377952.1 | IS6 family transposase | - |
| QLQ42_RS02065 (QLQ42_02065) | - | 403861..404175 (+) | 315 | WP_002403043.1 | hypothetical protein | - |
| QLQ42_RS02070 (QLQ42_02070) | cylR2 | 404513..404713 (-) | 201 | WP_002370931.1 | cytolysin regulator CylR2 | - |
| QLQ42_RS02075 (QLQ42_02075) | cylL-L | 405117..405323 (+) | 207 | WP_002358485.1 | lanthipeptide cytolysin subunit CylL-L | - |
| QLQ42_RS02080 (QLQ42_02080) | cylL-S | 405357..405548 (+) | 192 | WP_002358181.1 | lanthipeptide cytolysin subunit CylL-S | - |
| QLQ42_RS02085 (QLQ42_02085) | - | 405609..408590 (+) | 2982 | WP_002370929.1 | type 2 lanthipeptide synthetase LanM family protein | - |
| QLQ42_RS02090 (QLQ42_02090) | - | 408602..410746 (+) | 2145 | WP_002370927.1 | peptidase domain-containing ABC transporter | - |
| QLQ42_RS02095 (QLQ42_02095) | - | 410743..411981 (+) | 1239 | WP_002368283.1 | S8 family serine peptidase | - |
| QLQ42_RS02100 (QLQ42_02100) | - | 411982..412965 (+) | 984 | WP_002368282.1 | site-2 protease family protein | - |
| QLQ42_RS02105 (QLQ42_02105) | - | 413318..413881 (+) | 564 | WP_002370925.1 | hypothetical protein | - |
| QLQ42_RS02110 (QLQ42_02110) | - | 414318..414785 (+) | 468 | WP_002370921.1 | hypothetical protein | - |
| QLQ42_RS02115 (QLQ42_02115) | - | 414863..415444 (+) | 582 | WP_002401490.1 | hypothetical protein | - |
| QLQ42_RS02120 (QLQ42_02120) | - | 415539..415745 (+) | 207 | WP_229017897.1 | S41 family peptidase | - |
| QLQ42_RS02125 (QLQ42_02125) | amaP | 416015..416581 (+) | 567 | WP_010706722.1 | alkaline shock response membrane anchor protein AmaP | - |
| QLQ42_RS02130 (QLQ42_02130) | - | 416598..416789 (+) | 192 | WP_002358517.1 | DUF2273 domain-containing protein | - |
| QLQ42_RS02135 (QLQ42_02135) | - | 416818..417354 (+) | 537 | WP_002358518.1 | Asp23/Gls24 family envelope stress response protein | - |
| QLQ42_RS02140 (QLQ42_02140) | - | 417629..423250 (+) | 5622 | WP_202289641.1 | Rib/alpha-like domain-containing protein | - |
| QLQ42_RS02145 (QLQ42_02145) | - | 423450..424658 (+) | 1209 | WP_002358521.1 | YSIRK-targeted surface antigen transcriptional regulator | - |
| QLQ42_RS02150 (QLQ42_02150) | - | 424788..425204 (+) | 417 | WP_002358522.1 | hypothetical protein | - |
| QLQ42_RS02155 (QLQ42_02155) | - | 425340..425441 (-) | 102 | Protein_403 | IS30 family transposase | - |
| QLQ42_RS02160 (QLQ42_02160) | - | 425429..426166 (+) | 738 | WP_002401428.1 | hypothetical protein | - |
| QLQ42_RS02165 (QLQ42_02165) | - | 426212..426832 (-) | 621 | WP_143341923.1 | recombinase family protein | - |
| QLQ42_RS02170 (QLQ42_02170) | - | 427016..427635 (+) | 620 | Protein_406 | recombinase family protein | - |
| QLQ42_RS02175 (QLQ42_02175) | - | 428382..429200 (-) | 819 | WP_002358531.1 | MurR/RpiR family transcriptional regulator | - |
| QLQ42_RS02180 (QLQ42_02180) | - | 429356..430063 (+) | 708 | WP_002358533.1 | N-acetylmannosamine-6-phosphate 2-epimerase | - |
| QLQ42_RS02185 (QLQ42_02185) | - | 430056..431558 (+) | 1503 | WP_002358534.1 | PTS transporter subunit EIIC | - |
| QLQ42_RS02190 (QLQ42_02190) | - | 431569..432051 (+) | 483 | WP_002358535.1 | PTS glucose transporter subunit IIA | - |
Sequence
Protein
Download Length: 152 a.a. Molecular weight: 17179.08 Da Isoelectric Point: 4.6511
>NTDB_id=828891 QLQ42_RS01950 WP_002365911.1 382497..382955(+) (ssb) [Enterococcus faecalis strain EfsC123]
MINNVTLVGRLTKDPDLRYTQSGTAVGQFTLAINRNFTNANNEREADFINCVIWRKAAESLANYATKGTLIGLTGRIQTR
NYENQQGQRIYVTEVVTESFQLLESREVNEQRKEQATGKATFDKQSMDKPDPLDPFSPENSIVDISDNDLPF
MINNVTLVGRLTKDPDLRYTQSGTAVGQFTLAINRNFTNANNEREADFINCVIWRKAAESLANYATKGTLIGLTGRIQTR
NYENQQGQRIYVTEVVTESFQLLESREVNEQRKEQATGKATFDKQSMDKPDPLDPFSPENSIVDISDNDLPF
Nucleotide
Download Length: 459 bp
>NTDB_id=828891 QLQ42_RS01950 WP_002365911.1 382497..382955(+) (ssb) [Enterococcus faecalis strain EfsC123]
TTGATTAATAACGTTACATTAGTTGGACGATTAACCAAAGACCCAGATTTAAGGTATACGCAAAGTGGAACAGCCGTAGG
TCAATTTACGTTGGCCATTAATCGCAACTTTACCAATGCTAACAATGAAAGGGAAGCAGATTTTATCAACTGTGTTATTT
GGCGGAAAGCTGCAGAGTCATTAGCAAATTATGCAACAAAAGGGACTCTGATCGGTTTAACTGGTCGCATTCAAACAAGA
AACTATGAGAATCAACAAGGCCAGCGTATTTATGTAACTGAGGTTGTCACAGAAAGCTTCCAACTATTAGAATCAAGAGA
AGTAAACGAGCAACGAAAAGAACAGGCTACAGGTAAAGCTACGTTTGATAAACAGTCAATGGATAAACCTGATCCTCTGG
ATCCATTTTCGCCAGAAAATAGCATAGTGGATATTTCTGATAATGACCTGCCGTTTTAA
TTGATTAATAACGTTACATTAGTTGGACGATTAACCAAAGACCCAGATTTAAGGTATACGCAAAGTGGAACAGCCGTAGG
TCAATTTACGTTGGCCATTAATCGCAACTTTACCAATGCTAACAATGAAAGGGAAGCAGATTTTATCAACTGTGTTATTT
GGCGGAAAGCTGCAGAGTCATTAGCAAATTATGCAACAAAAGGGACTCTGATCGGTTTAACTGGTCGCATTCAAACAAGA
AACTATGAGAATCAACAAGGCCAGCGTATTTATGTAACTGAGGTTGTCACAGAAAGCTTCCAACTATTAGAATCAAGAGA
AGTAAACGAGCAACGAAAAGAACAGGCTACAGGTAAAGCTACGTTTGATAAACAGTCAATGGATAAACCTGATCCTCTGG
ATCCATTTTCGCCAGAAAATAGCATAGTGGATATTTCTGATAATGACCTGCCGTTTTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Latilactobacillus sakei subsp. sakei 23K |
56.471 |
100 |
0.632 |
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
47.283 |
100 |
0.572 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
56.604 |
69.737 |
0.395 |
| ssbB/cilA | Streptococcus mitis NCTC 12261 |
50 |
76.316 |
0.382 |
| ssbB | Streptococcus sobrinus strain NIDR 6715-7 |
53.774 |
69.737 |
0.375 |
| ssbB/cilA | Streptococcus pneumoniae TIGR4 |
49.138 |
76.316 |
0.375 |
| ssbB/cilA | Streptococcus pneumoniae Rx1 |
48.276 |
76.316 |
0.368 |
| ssbB/cilA | Streptococcus pneumoniae D39 |
48.276 |
76.316 |
0.368 |
| ssbB/cilA | Streptococcus pneumoniae R6 |
48.276 |
76.316 |
0.368 |
| ssbB/cilA | Streptococcus mitis SK321 |
48.276 |
76.316 |
0.368 |