Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilU   Type   Machinery gene
Locus tag   QLQ87_RS11495 Genome accession   NZ_CP124841
Coordinates   2520558..2521667 (+) Length   369 a.a.
NCBI ID   WP_087757149.1    Uniprot ID   -
Organism   Aeromonas salmonicida strain 57     
Function   type IV pilus retraction (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2515558..2526667
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QLQ87_RS11460 (QLQ87_11460) - 2516147..2516446 (+) 300 WP_011899099.1 hypothetical protein -
  QLQ87_RS11465 (QLQ87_11465) - 2516515..2516934 (-) 420 WP_005320482.1 DUF4426 domain-containing protein -
  QLQ87_RS11470 (QLQ87_11470) yggU 2516953..2517252 (-) 300 WP_005320479.1 DUF167 family protein YggU -
  QLQ87_RS11475 (QLQ87_11475) - 2517252..2517803 (-) 552 WP_059169414.1 YggT family protein -
  QLQ87_RS11480 (QLQ87_11480) proC 2517832..2518656 (-) 825 WP_282683227.1 pyrroline-5-carboxylate reductase -
  QLQ87_RS11485 (QLQ87_11485) - 2518747..2519448 (-) 702 WP_113720587.1 YggS family pyridoxal phosphate-dependent enzyme -
  QLQ87_RS11490 (QLQ87_11490) pilT 2519488..2520522 (+) 1035 WP_005320466.1 type IVa pilus ATPase TapT Machinery gene
  QLQ87_RS11495 (QLQ87_11495) pilU 2520558..2521667 (+) 1110 WP_087757149.1 type IVa pilus ATPase TapU Machinery gene
  QLQ87_RS11500 (QLQ87_11500) yaaA 2521699..2522472 (+) 774 WP_125596809.1 peroxide stress protein YaaA -
  QLQ87_RS11505 (QLQ87_11505) srmB 2522661..2523884 (-) 1224 WP_005320462.1 ATP-dependent RNA helicase SrmB -
  QLQ87_RS11510 (QLQ87_11510) - 2524013..2524723 (+) 711 WP_282683228.1 methyltransferase -
  QLQ87_RS11515 (QLQ87_11515) brnQ 2524960..2526222 (+) 1263 WP_005320459.1 branched-chain amino acid transport system II carrier protein -
  QLQ87_RS11520 (QLQ87_11520) - 2526298..2526528 (-) 231 WP_192896245.1 hypothetical protein -

Sequence

Protein


Download         Length: 369 a.a.        Molecular weight: 41059.10 Da        Isoelectric Point: 6.3717

>NTDB_id=828312 QLQ87_RS11495 WP_087757149.1 2520558..2521667(+) (pilU) [Aeromonas salmonicida strain 57]
MNLDALLAELVARKGSDLFITVGTPPTLKINGHLFSLGSEALDKQSALTLVRETLSPEHFERYIRTKEGNYAIHREALGR
FRVSAFWQQELPGMVVRRIETRIPTFDELTLPPILQEVAMAKRGLVLFVGATGTGKSTTQAAMIGYRNQNADGHILTVED
PVEFVHQHGRSLITQREVGIDTESFDVALKSSLRQAPDVILIGEIRSQETMEFALQFAETGHLCLATLHANNANQALDRI
LHLVPQEKHRQLLFDLSFNLRAIVAQQLVPSLDGRRRFAAFEVLLNTPLITDIIRKGEVHRLKEVMTKSTELGMQTFDQA
LFTLFCAGQIGYSEALAHADSANDLRLLIKLSGREQMGAGTLDNVTLDE

Nucleotide


Download         Length: 1110 bp        

>NTDB_id=828312 QLQ87_RS11495 WP_087757149.1 2520558..2521667(+) (pilU) [Aeromonas salmonicida strain 57]
ATGAATCTGGATGCCCTGTTGGCCGAACTGGTCGCACGCAAAGGCTCGGATCTGTTCATCACGGTTGGTACGCCCCCCAC
CCTCAAGATCAACGGGCATCTGTTCTCCCTCGGCAGCGAAGCGCTCGACAAGCAGAGCGCGCTGACCCTGGTCAGGGAAA
CGCTCAGCCCTGAGCATTTCGAGCGATACATCCGCACCAAGGAGGGCAACTACGCCATCCACCGCGAGGCACTGGGACGC
TTTCGGGTAAGTGCCTTCTGGCAGCAGGAGTTGCCGGGCATGGTGGTACGCCGTATCGAGACCCGCATTCCAACCTTCGA
CGAACTGACCCTGCCGCCCATCTTGCAGGAGGTGGCCATGGCCAAACGCGGCCTGGTGCTGTTCGTCGGCGCCACCGGAA
CGGGCAAATCCACCACTCAGGCAGCCATGATCGGCTATCGAAACCAGAATGCGGATGGCCATATCCTGACGGTGGAAGAT
CCGGTGGAGTTCGTGCATCAGCACGGCCGCAGCCTGATCACCCAGCGGGAAGTGGGCATAGATACGGAATCATTCGATGT
GGCGCTGAAGAGCTCCCTGCGCCAGGCACCTGACGTTATTCTCATCGGCGAGATCCGAAGCCAGGAAACCATGGAGTTCG
CACTGCAATTTGCCGAGACAGGTCATCTTTGCCTCGCGACCCTGCACGCCAACAATGCCAACCAGGCGCTGGATCGCATC
CTCCATCTGGTACCGCAGGAGAAACACCGCCAGTTACTGTTCGATCTCTCCTTCAACCTGCGCGCCATCGTCGCCCAGCA
ACTGGTGCCAAGCCTGGATGGTCGCCGCCGCTTCGCGGCCTTTGAAGTGCTGCTCAACACGCCGCTCATCACGGATATCA
TCCGCAAAGGCGAGGTTCATCGTCTCAAGGAGGTGATGACCAAATCCACCGAGCTTGGCATGCAGACCTTCGATCAGGCG
CTATTTACCCTGTTTTGTGCCGGCCAAATTGGCTACAGTGAGGCCCTTGCCCATGCCGACTCGGCCAACGACCTGCGACT
GCTGATCAAGCTGTCCGGCCGTGAGCAGATGGGTGCAGGCACACTCGACAACGTCACCCTGGATGAATGA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(115-270)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilU Vibrio cholerae strain A1552

59.239

99.729

0.591
  pilU Pseudomonas stutzeri DSM 10701

59.544

95.122

0.566
  pilU Acinetobacter baylyi ADP1

57.79

95.664

0.553
  pilT Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

41.994

89.702

0.377
  pilT Legionella pneumophila strain Lp02

39.942

92.954

0.371
  pilT Legionella pneumophila strain ERS1305867

39.942

92.954

0.371
  pilT Vibrio cholerae O1 biovar El Tor strain E7946

40.419

90.515

0.366
  pilT Vibrio cholerae strain A1552

40.419

90.515

0.366
  pilT Acinetobacter baylyi ADP1

39.003

92.412

0.36