Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   QJ050_RS18820 Genome accession   NZ_CP124840
Coordinates   4095695..4096936 (-) Length   413 a.a.
NCBI ID   WP_059113460.1    Uniprot ID   A0AAP3UVF0
Organism   Aeromonas salmonicida strain 29     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4090695..4101936
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QJ050_RS18790 (QJ050_18790) - 4091482..4092666 (+) 1185 WP_282789583.1 tetratricopeptide repeat protein -
  QJ050_RS18795 (QJ050_18795) mutT 4092675..4093082 (+) 408 WP_005314168.1 8-oxo-dGTP diphosphatase MutT -
  QJ050_RS18800 (QJ050_18800) yacG 4093158..4093352 (-) 195 WP_005314167.1 DNA gyrase inhibitor YacG -
  QJ050_RS18805 (QJ050_18805) zapD 4093362..4094084 (-) 723 WP_021140336.1 cell division protein ZapD -
  QJ050_RS18810 (QJ050_18810) coaE 4094122..4094736 (-) 615 WP_005314164.1 dephospho-CoA kinase -
  QJ050_RS18815 (QJ050_18815) pilD 4094756..4095631 (-) 876 WP_282789584.1 A24 family peptidase Machinery gene
  QJ050_RS18820 (QJ050_18820) pilC 4095695..4096936 (-) 1242 WP_059113460.1 type II secretion system F family protein Machinery gene
  QJ050_RS18825 (QJ050_18825) pilB 4097069..4098775 (-) 1707 WP_058394588.1 PilB family type IVa pilus assembly ATPase TapB Machinery gene
  QJ050_RS18830 (QJ050_18830) - 4098779..4099180 (-) 402 WP_282789585.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  QJ050_RS18835 (QJ050_18835) nadC 4099516..4100373 (-) 858 WP_282789586.1 carboxylating nicotinate-nucleotide diphosphorylase -
  QJ050_RS18840 (QJ050_18840) - 4100378..4100848 (-) 471 WP_198315355.1 retropepsin-like aspartic protease -
  QJ050_RS18845 (QJ050_18845) ampD 4100998..4101570 (+) 573 WP_282790785.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -

Sequence

Protein


Download         Length: 413 a.a.        Molecular weight: 45324.44 Da        Isoelectric Point: 9.8834

>NTDB_id=828296 QJ050_RS18820 WP_059113460.1 4095695..4096936(-) (pilC) [Aeromonas salmonicida strain 29]
MATLTQKQNAPKKVFAFRWSGVNRKGQKVSGELQADSINTVKAELRKQGVNVTRVSKKSQGLFSKGGARIKPMDIAIVSR
QITTMLSAGVPLVQSLQIIARSHEKAAMRELMGQIAADVETGTPMSDALRRHPRHFDALYCDLVEAGEQSGALETIYDRI
ATYREKSEALKSKIKKAMFYPAMVILVAIVVTSILLLFVIPQFEDIFKSFGAELPIFTQFVIGISRFMQNWWYVIFGGIG
LGIFLYVRAWRASQKVKDNTDKFILTIPVVGMILHKAAMARFARTLSTTFSAGIPLVDALISAAGASGNYVYRTAVMAIR
NEVVAGMQINVAMRTVDLFPDMVIQMVMIGEESGAIDDMLSKVATIFEQEVDDLVDGLTSLLEPLIMVVLGVLVGGMVVA
MYLPIFKLGDVVG

Nucleotide


Download         Length: 1242 bp        

>NTDB_id=828296 QJ050_RS18820 WP_059113460.1 4095695..4096936(-) (pilC) [Aeromonas salmonicida strain 29]
ATGGCAACGCTAACGCAAAAACAGAATGCCCCCAAGAAAGTCTTTGCCTTCCGCTGGAGCGGGGTAAATCGCAAGGGTCA
GAAGGTATCCGGCGAGCTGCAGGCCGACAGCATCAATACGGTCAAGGCCGAACTGCGCAAGCAGGGGGTCAATGTCACCA
GAGTGAGCAAAAAGAGCCAGGGGCTTTTTTCCAAGGGTGGCGCCAGGATCAAACCGATGGATATCGCCATCGTTTCTCGT
CAGATCACCACAATGCTCTCCGCCGGGGTACCTCTGGTGCAGAGCCTGCAGATCATAGCACGCAGCCATGAAAAAGCCGC
GATGCGCGAGCTGATGGGCCAGATCGCTGCCGATGTGGAGACAGGCACCCCGATGTCAGATGCCCTGCGCCGCCACCCTC
GCCACTTTGATGCGCTCTATTGCGATCTGGTGGAAGCGGGCGAGCAATCCGGCGCCCTGGAAACCATCTACGATCGCATC
GCCACCTATAGAGAAAAATCGGAAGCGCTCAAGTCCAAGATCAAGAAGGCGATGTTCTATCCCGCCATGGTCATCCTGGT
CGCCATCGTCGTCACCTCCATACTGCTGCTGTTCGTCATCCCGCAGTTCGAGGACATCTTCAAGAGCTTTGGTGCCGAGC
TGCCCATCTTCACCCAGTTTGTCATCGGCATCTCCCGCTTCATGCAGAATTGGTGGTATGTGATTTTTGGCGGGATAGGG
CTTGGCATTTTCCTTTATGTACGAGCATGGCGCGCATCCCAGAAAGTCAAAGACAACACAGACAAGTTCATCCTCACCAT
TCCCGTGGTGGGCATGATACTGCACAAGGCGGCCATGGCCCGCTTCGCCCGCACCCTCTCCACCACCTTCTCGGCGGGCA
TACCCCTGGTGGATGCACTGATCTCGGCCGCCGGCGCCTCAGGCAACTATGTCTATCGCACCGCCGTCATGGCCATTCGC
AACGAGGTGGTAGCCGGCATGCAGATCAACGTGGCCATGCGCACCGTGGATCTCTTCCCCGACATGGTGATCCAGATGGT
GATGATCGGTGAGGAGTCAGGCGCCATCGATGATATGCTCTCCAAGGTCGCGACCATCTTCGAGCAAGAGGTCGATGACT
TGGTCGACGGCCTCACCAGCCTGCTGGAGCCTCTCATCATGGTGGTGCTGGGGGTACTGGTCGGCGGTATGGTCGTTGCC
ATGTACCTGCCCATCTTCAAGCTGGGTGACGTGGTAGGCTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(79-201)

Type II secretion system (T2SS), protein F (T2SSF)

(282-404)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

56.313

95.884

0.54
  pilC Acinetobacter baumannii D1279779

54.5

96.852

0.528
  pilC Acinetobacter baylyi ADP1

52.393

96.126

0.504
  pilC Legionella pneumophila strain ERS1305867

50.617

98.063

0.496
  pilC Vibrio cholerae strain A1552

47.382

97.094

0.46
  pilC Vibrio campbellii strain DS40M4

46.535

97.821

0.455
  pilG Neisseria gonorrhoeae MS11

40.247

98.063

0.395
  pilG Neisseria meningitidis 44/76-A

40

98.063

0.392
  pilC Thermus thermophilus HB27

37.75

96.852

0.366