Detailed information NTG0828295

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: QJ050_RS18815
• Genome accession: NZ_CP124840
• Coordinates: 4094756..4095631 (-)
• Length: 291 a.a.
• NCBI ID: WP_282789584.1
• Uniprot ID: -
• Organism: Aeromonas salmonicida strain 29
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 4089756..4100631

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
QJ050_RS18790 (QJ050_18790)	-	4091482..4092666 (+)	1185	WP_282789583.1	tetratricopeptide repeat protein	-
QJ050_RS18795 (QJ050_18795)	mutT	4092675..4093082 (+)	408	WP_005314168.1	8-oxo-dGTP diphosphatase MutT	-
QJ050_RS18800 (QJ050_18800)	yacG	4093158..4093352 (-)	195	WP_005314167.1	DNA gyrase inhibitor YacG	-
QJ050_RS18805 (QJ050_18805)	zapD	4093362..4094084 (-)	723	WP_021140336.1	cell division protein ZapD	-
QJ050_RS18810 (QJ050_18810)	coaE	4094122..4094736 (-)	615	WP_005314164.1	dephospho-CoA kinase	-
QJ050_RS18815 (QJ050_18815)	pilD	4094756..4095631 (-)	876	WP_282789584.1	A24 family peptidase	Machinery gene
QJ050_RS18820 (QJ050_18820)	pilC	4095695..4096936 (-)	1242	WP_059113460.1	type II secretion system F family protein	Machinery gene
QJ050_RS18825 (QJ050_18825)	pilB	4097069..4098775 (-)	1707	WP_058394588.1	PilB family type IVa pilus assembly ATPase TapB	Machinery gene
QJ050_RS18830 (QJ050_18830)	-	4098779..4099180 (-)	402	WP_282789585.1	prepilin-type N-terminal cleavage/methylation domain-containing protein	-
QJ050_RS18835 (QJ050_18835)	nadC	4099516..4100373 (-)	858	WP_282789586.1	carboxylating nicotinate-nucleotide diphosphorylase	-

Sequence

Protein

• Length: 291 a.a.
• Molecular weight: 32584.77 Da
• Isoelectric Point: 6.4791

>NTDB_id=828295 QJ050_RS18815 WP_282789584.1 4094756..4095631(-) (pilD) [Aeromonas salmonicida strain 29]
MTLLLELAHGLPWLYFSLVFLFSLMIGSFLNVVIHRLPIMLEREWQAEYRSYFSSDTPQPEDDERYNLMVPRSCCPHCNH
PITALENIPLLSWLWLKGRCRGCQATISARYPLVELLTALLSVVVAMTLTPGWGTLAALLLTWVLVALTFIDLDKMLLPD
QLTLPLLWGGLLFNLLGGYVPLDDAVIGAMAGYLVLWSLYWAFKLLTGKEGMGYGDFKLLAALGAWLGWQAQPIVLLLSS
LVGAIFGIGLILLRNHHQSKPIPFGPYLAIAGWIALLWGDSITRWYLSTIL

Nucleotide

• Length: 876 bp

>NTDB_id=828295 QJ050_RS18815 WP_282789584.1 4094756..4095631(-) (pilD) [Aeromonas salmonicida strain 29]
ATGACACTTCTTCTCGAGCTGGCACACGGCTTGCCATGGCTCTACTTCTCGCTGGTATTTCTCTTCTCCCTGATGATCGG
CAGCTTTCTCAACGTGGTGATCCACCGCCTGCCCATCATGCTGGAACGGGAGTGGCAGGCCGAATATCGCAGCTATTTCA
GTTCAGACACGCCGCAGCCAGAAGATGACGAGCGCTACAATCTGATGGTGCCGCGCTCCTGCTGCCCTCACTGCAATCAC
CCCATAACGGCACTGGAAAACATACCCCTGCTGAGCTGGCTCTGGCTCAAAGGTCGCTGCCGGGGGTGCCAGGCCACCAT
TTCGGCTCGCTATCCGCTGGTGGAGCTGTTGACCGCTCTGCTCTCTGTGGTGGTTGCCATGACGCTCACCCCAGGCTGGG
GCACGCTGGCTGCCCTCCTGCTGACCTGGGTGCTGGTGGCGCTCACCTTTATCGATCTGGACAAGATGCTGCTGCCGGAC
CAGCTCACCTTGCCGCTACTGTGGGGCGGGCTGCTGTTCAACCTGCTGGGCGGATACGTGCCTCTCGACGATGCTGTCAT
CGGCGCCATGGCAGGCTATCTGGTGCTATGGAGCCTCTACTGGGCCTTCAAGCTGCTTACCGGCAAGGAAGGCATGGGCT
ATGGGGACTTCAAACTGCTGGCGGCGCTGGGAGCCTGGCTTGGCTGGCAGGCGCAGCCCATCGTACTGCTGCTCTCTTCT
CTGGTCGGCGCCATCTTCGGCATTGGCCTCATTTTGCTGCGCAACCATCACCAGAGCAAACCCATCCCCTTTGGCCCTTA
TCTCGCCATCGCAGGCTGGATCGCACTGCTCTGGGGCGATAGCATCACCCGCTGGTATCTCTCCACAATCCTCTGA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-128)

• Type IV leader peptidase family (Peptidase_A24) (140-248)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	60.764	98.969	0.601
pilD	Vibrio campbellii strain DS40M4	55.208	98.969	0.546
pilD	Acinetobacter baumannii D1279779	55.019	92.44	0.509
pilD	Acinetobacter nosocomialis M2	55.019	92.44	0.509
pilD	Neisseria gonorrhoeae MS11	50.373	92.096	0.464