Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   K9V56_RS05200 Genome accession   NZ_CP124551
Coordinates   1185523..1186743 (-) Length   406 a.a.
NCBI ID   WP_171827656.1    Uniprot ID   -
Organism   Kinneretia aquatilis strain DH15     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1180523..1191743
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K9V56_RS05170 (K9V56_005170) pgi 1180595..1182232 (+) 1638 WP_171827660.1 glucose-6-phosphate isomerase -
  K9V56_RS05175 (K9V56_005175) - 1182237..1182878 (+) 642 WP_171827659.1 HAD family hydrolase -
  K9V56_RS05180 (K9V56_005180) - 1182864..1183055 (-) 192 WP_171827658.1 DNA gyrase inhibitor YacG -
  K9V56_RS05185 (K9V56_005185) zapD 1183096..1183851 (-) 756 WP_102766589.1 cell division protein ZapD -
  K9V56_RS05190 (K9V56_005190) coaE 1183967..1184587 (-) 621 WP_263299991.1 dephospho-CoA kinase -
  K9V56_RS05195 (K9V56_005195) - 1184578..1185510 (-) 933 WP_171827657.1 prepilin peptidase -
  K9V56_RS05200 (K9V56_005200) pilC 1185523..1186743 (-) 1221 WP_171827656.1 type II secretion system F family protein Machinery gene
  K9V56_RS05205 (K9V56_005205) pilF 1186800..1188467 (-) 1668 WP_171827790.1 type IV-A pilus assembly ATPase PilB Machinery gene
  K9V56_RS05210 (K9V56_005210) - 1188890..1191106 (-) 2217 WP_285805973.1 ATP-binding protein -

Sequence

Protein


Download         Length: 406 a.a.        Molecular weight: 44180.86 Da        Isoelectric Point: 9.5643

>NTDB_id=826429 K9V56_RS05200 WP_171827656.1 1185523..1186743(-) (pilC) [Kinneretia aquatilis strain DH15]
MATSAAAKNTAEFVFEWEGKDRNGKIVRGELRAGGEAMVSATLRRQGILVSKVKKRRMSGGKAIKQKDIAIFTRQLATMM
RAGVPLLQSFEIVGRGSTNPRLTRLLNDIKQDVETGTSLSNALRKQPLYFDALYCNLVEAGEAAGILESLLDRLAIYQEK
TVAIKNKIKSALTYPIAVFVVAFVVVAVIMIFVVPAFKDVFQSFGADLPAPTLAVIAMSEFFVAYWWLIFLSIGGGLYFF
FQSWKRSVKMQHTMDRLLLKIPVFGELLYKSAVARWTRTLSTMFAAGVPLVEALDSVGGAAGNAVFAEATEKIQRDVSTG
TALTTSMQTTGIFPTMVIQMAAIGEESGSLDHMLGKAAEFFEDEVDEAVAALSSLMEPFIIVILGGIIGGIVVSMYLPIF
KLGQVV

Nucleotide


Download         Length: 1221 bp        

>NTDB_id=826429 K9V56_RS05200 WP_171827656.1 1185523..1186743(-) (pilC) [Kinneretia aquatilis strain DH15]
ATGGCGACTAGTGCGGCAGCCAAGAACACGGCGGAGTTCGTGTTCGAGTGGGAAGGCAAGGACCGCAACGGCAAGATCGT
GCGTGGTGAGTTGCGCGCCGGGGGCGAGGCCATGGTCAGCGCCACCCTGCGCCGCCAGGGCATCCTGGTCAGCAAGGTCA
AGAAGCGCCGCATGAGCGGCGGCAAGGCCATCAAGCAAAAAGACATCGCCATCTTCACCCGCCAGCTGGCCACCATGATG
CGGGCCGGCGTGCCCCTGCTGCAGTCTTTCGAGATCGTCGGCCGCGGCAGCACCAACCCGCGCCTGACCCGCCTGCTCAA
CGACATCAAGCAGGATGTCGAGACCGGCACCAGCCTGTCCAATGCCCTGCGCAAGCAGCCGCTCTACTTCGACGCGCTCT
ACTGCAATCTGGTGGAAGCTGGCGAGGCTGCCGGTATCCTGGAATCCCTGCTCGACCGCCTGGCCATCTACCAGGAGAAG
ACGGTCGCCATCAAGAACAAGATCAAGTCCGCCCTGACCTACCCGATCGCCGTGTTTGTGGTCGCCTTTGTCGTGGTGGC
CGTGATCATGATCTTCGTCGTACCGGCCTTCAAGGACGTGTTCCAGAGCTTCGGCGCCGACCTGCCCGCGCCGACGCTGG
CCGTGATCGCCATGTCGGAGTTCTTTGTCGCCTACTGGTGGCTGATCTTCCTCAGCATCGGCGGCGGCCTGTATTTCTTC
TTCCAGAGCTGGAAACGCTCGGTCAAGATGCAGCACACCATGGACCGGCTGCTGCTGAAGATCCCGGTCTTCGGTGAGCT
GCTCTACAAATCGGCCGTGGCCCGCTGGACCCGAACCCTGTCGACCATGTTTGCCGCCGGCGTGCCTTTGGTGGAAGCCT
TGGATTCGGTCGGTGGCGCGGCCGGCAATGCCGTGTTTGCCGAGGCGACCGAGAAGATCCAGCGCGATGTCTCCACCGGC
ACGGCCCTGACCACCTCGATGCAGACCACCGGCATCTTCCCGACCATGGTGATCCAGATGGCCGCCATCGGCGAAGAGTC
CGGCTCGCTGGACCACATGCTGGGCAAGGCGGCCGAGTTCTTCGAGGACGAGGTCGACGAGGCGGTGGCCGCTCTGTCCA
GCCTGATGGAACCCTTCATCATCGTCATCCTGGGCGGCATCATCGGCGGCATCGTCGTGTCCATGTACCTGCCCATCTTC
AAGCTCGGCCAAGTGGTCTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(276-398)

Type II secretion system (T2SS), protein F (T2SSF)

(72-195)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

56.683

99.507

0.564
  pilC Legionella pneumophila strain ERS1305867

52.97

99.507

0.527
  pilG Neisseria meningitidis 44/76-A

52

98.522

0.512
  pilG Neisseria gonorrhoeae MS11

52

98.522

0.512
  pilC Acinetobacter baylyi ADP1

50.614

100

0.507
  pilC Acinetobacter baumannii D1279779

50.378

97.783

0.493
  pilC Vibrio cholerae strain A1552

40.404

97.537

0.394
  pilC Thermus thermophilus HB27

39.702

99.261

0.394
  pilC Vibrio campbellii strain DS40M4

38.384

97.537

0.374