Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   QHG62_RS13220 Genome accession   NZ_CP123990
Coordinates   2721526..2722755 (-) Length   409 a.a.
NCBI ID   WP_281151285.1    Uniprot ID   -
Organism   Variovorax paradoxus strain MGMM5     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2716526..2727755
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QHG62_RS13195 (QHG62_13195) zapD 2716551..2717306 (-) 756 WP_281151281.1 cell division protein ZapD -
  QHG62_RS13200 (QHG62_13200) - 2717334..2718374 (-) 1041 WP_281151282.1 hypothetical protein -
  QHG62_RS13205 (QHG62_13205) - 2718376..2719821 (-) 1446 WP_281151283.1 MBOAT family protein -
  QHG62_RS13210 (QHG62_13210) coaE 2719945..2720550 (-) 606 WP_281151618.1 dephospho-CoA kinase -
  QHG62_RS13215 (QHG62_13215) - 2720561..2721526 (-) 966 WP_281151284.1 A24 family peptidase -
  QHG62_RS13220 (QHG62_13220) pilC 2721526..2722755 (-) 1230 WP_281151285.1 type II secretion system F family protein Machinery gene
  QHG62_RS13225 (QHG62_13225) pilB 2722785..2724524 (-) 1740 WP_281151286.1 type IV-A pilus assembly ATPase PilB Machinery gene
  QHG62_RS13235 (QHG62_13235) - 2724766..2725758 (-) 993 WP_281151620.1 polyprenyl synthetase family protein -
  QHG62_RS13240 (QHG62_13240) rplU 2725950..2726261 (+) 312 WP_028259151.1 50S ribosomal protein L21 -
  QHG62_RS13245 (QHG62_13245) rpmA 2726274..2726534 (+) 261 WP_028259150.1 50S ribosomal protein L27 -
  QHG62_RS13250 (QHG62_13250) cgtA 2726605..2727681 (+) 1077 WP_281151288.1 Obg family GTPase CgtA -

Sequence

Protein


Download         Length: 409 a.a.        Molecular weight: 44702.34 Da        Isoelectric Point: 9.6306

>NTDB_id=823618 QHG62_RS13220 WP_281151285.1 2721526..2722755(-) (pilC) [Variovorax paradoxus strain MGMM5]
MATVASKRTSNTLKEFVYEWEGKDRNGKLVRGELRAAGENQVQAALRRQGVLASKIKKRRMRSGKSIKPKDIAIFTRQLA
TMMKAGVPLLQSFDIVGRGNANPSVAKLLNDIRSDVETGTSLSAAFRKFPKYFDNLYCNLVEAGEAAGILEDLLDRLATY
MEKTEAIKSKIKSALMYPTSVVVVAFIVVAIIMIFVIPAFKEVFTSFGADLPAPTLFVMAISEFFVSYWWLIFGGIGGGI
YFFLQAWKRNEKVQRVMDRALLRVPIFGTLIEKSCVARWTRTLATMFAAGVPLVEALDSVGGASGNTVYGDATAKIQQEV
STGTSLTTAMTNVNLFPSMVIQMTAIGEESGSIDHMLGKAADFYESEVDDMVAGLSSLMEPIIIVFLGTIIGGIVVSMYL
PIFKLGQVV

Nucleotide


Download         Length: 1230 bp        

>NTDB_id=823618 QHG62_RS13220 WP_281151285.1 2721526..2722755(-) (pilC) [Variovorax paradoxus strain MGMM5]
ATGGCAACAGTGGCATCCAAGCGCACTTCAAACACACTCAAGGAATTTGTCTACGAGTGGGAAGGCAAGGACCGCAATGG
CAAGCTGGTGCGTGGCGAACTCCGCGCCGCCGGCGAGAACCAGGTGCAGGCCGCACTGCGGCGCCAGGGGGTTCTTGCAT
CCAAGATCAAGAAGCGCCGCATGCGCTCGGGCAAGTCCATCAAGCCCAAGGACATCGCGATTTTCACGCGCCAATTGGCA
ACGATGATGAAAGCTGGCGTCCCGCTGCTGCAGTCGTTCGACATCGTCGGCCGTGGCAACGCGAACCCGAGCGTTGCCAA
GTTGCTGAACGACATTCGAAGCGACGTGGAGACCGGAACCTCGCTTTCGGCGGCGTTTCGCAAGTTTCCGAAGTACTTCG
ATAACCTCTATTGCAACCTGGTGGAGGCTGGTGAAGCGGCCGGTATCCTCGAAGACCTGTTGGACCGCCTCGCCACCTAC
ATGGAGAAGACGGAAGCGATCAAGTCGAAGATCAAGTCGGCACTCATGTATCCCACATCGGTGGTGGTCGTGGCGTTTAT
CGTGGTGGCAATCATCATGATCTTTGTGATTCCGGCTTTCAAGGAGGTGTTCACCTCCTTCGGTGCCGACCTGCCCGCTC
CCACGCTCTTCGTGATGGCCATCAGTGAGTTCTTCGTCTCGTACTGGTGGCTGATCTTCGGTGGAATTGGCGGCGGCATC
TACTTCTTCCTGCAGGCGTGGAAGCGCAACGAAAAAGTTCAGCGGGTGATGGACCGCGCACTTTTGCGCGTGCCGATCTT
CGGTACTCTCATCGAAAAATCGTGCGTGGCCCGCTGGACCCGCACCCTGGCCACCATGTTTGCCGCCGGCGTTCCGCTCG
TCGAAGCGCTCGACTCAGTGGGCGGCGCCTCGGGCAACACCGTTTACGGCGACGCGACGGCCAAGATCCAGCAAGAGGTC
TCGACCGGTACCAGCCTCACCACGGCCATGACCAACGTCAACCTGTTTCCCTCGATGGTGATCCAGATGACGGCCATCGG
TGAAGAGTCCGGCTCCATCGACCACATGCTCGGCAAGGCCGCCGACTTCTACGAGTCCGAAGTGGACGACATGGTGGCCG
GCCTCTCGAGCCTGATGGAACCCATCATCATCGTGTTCCTGGGCACCATCATCGGCGGCATCGTGGTGTCGATGTACCTG
CCGATCTTCAAGCTGGGCCAAGTGGTTTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(75-198)

Type II secretion system (T2SS), protein F (T2SSF)

(279-401)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

54.25

97.8

0.531
  pilG Neisseria gonorrhoeae MS11

53.03

96.822

0.513
  pilG Neisseria meningitidis 44/76-A

52.778

96.822

0.511
  pilC Acinetobacter baylyi ADP1

51.005

97.311

0.496
  pilC Legionella pneumophila strain ERS1305867

48.635

98.533

0.479
  pilC Acinetobacter baumannii D1279779

49.37

97.066

0.479
  pilC Vibrio cholerae strain A1552

40.686

99.756

0.406
  pilC Thermus thermophilus HB27

38.186

100

0.391
  pilC Vibrio campbellii strain DS40M4

39.702

98.533

0.391