Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   QGQ83_RS14820 Genome accession   NZ_CP123957
Coordinates   3219426..3220634 (-) Length   402 a.a.
NCBI ID   WP_281114361.1    Uniprot ID   -
Organism   Pseudomonas marginalis strain MGMM3     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3214426..3225634
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QGQ83_RS14780 (QGQ83_14780) - 3215343..3215516 (-) 174 WP_016976295.1 DUF3094 family protein -
  QGQ83_RS14785 (QGQ83_14785) - 3215570..3216199 (-) 630 WP_027604891.1 DUF1780 domain-containing protein -
  QGQ83_RS14790 (QGQ83_14790) - 3216305..3216772 (+) 468 WP_281114358.1 FAD/FMN-containing dehydrogenase -
  QGQ83_RS14795 (QGQ83_14795) - 3216769..3217458 (+) 690 WP_281114359.1 energy-coupling factor ABC transporter permease -
  QGQ83_RS14800 (QGQ83_14800) - 3217534..3217749 (+) 216 WP_003171680.1 hypothetical protein -
  QGQ83_RS14805 (QGQ83_14805) yacG 3217746..3217946 (-) 201 WP_027604888.1 DNA gyrase inhibitor YacG -
  QGQ83_RS14810 (QGQ83_14810) coaE 3217943..3218566 (-) 624 WP_281114360.1 dephospho-CoA kinase -
  QGQ83_RS14815 (QGQ83_14815) pilD 3218563..3219429 (-) 867 WP_065938482.1 A24 family peptidase Machinery gene
  QGQ83_RS14820 (QGQ83_14820) pilC 3219426..3220634 (-) 1209 WP_281114361.1 type II secretion system F family protein Machinery gene
  QGQ83_RS14825 (QGQ83_14825) - 3220837..3221247 (+) 411 WP_281114535.1 pilin -
  QGQ83_RS14830 (QGQ83_14830) - 3221283..3222683 (+) 1401 WP_281114362.1 O-antigen ligase family protein -
  QGQ83_RS14840 (QGQ83_14840) - 3222955..3223260 (+) 306 WP_027604882.1 DUF6388 family protein -
  QGQ83_RS14845 (QGQ83_14845) nadC 3223335..3224183 (-) 849 WP_027604881.1 carboxylating nicotinate-nucleotide diphosphorylase -

Sequence

Protein


Download         Length: 402 a.a.        Molecular weight: 43333.63 Da        Isoelectric Point: 10.1462

>NTDB_id=823239 QGQ83_RS14820 WP_281114361.1 3219426..3220634(-) (pilC) [Pseudomonas marginalis strain MGMM3]
MNNASTIYAWEGINRKGRRVSGQTKGHNAALVKAQLRQQGISPGRVRKQSLLLPNLTPSVKAADITLFTRQLATLLKAGV
PLLQAFDIISEGVDNRAVREQVMGLKQAIAAGSSLAEALRKQPRHFDELYCNLVAAGEQAGALETLLERVAIHREKSEQL
KARIKKAMTYPIAVLVVASLVTGILLVHVVPQFQALFAGVDGKLPAFTLQVIALSAFMQHAWWMLVLGIVAGAAALRQAY
RTSSGFRCWLDTGLLKAPLAGKLLTKSAVARYARTLSTTFAAGVPLVQALDSVAGAVGNDPFKQAIEHMRHDVSNGMQLN
QSMLNSGLFPGMAIQLTAIGEESGTLEHMLEKVANHYEADVDNQVDNLTSLMEPLIMVVLGGIVGALVIAMYLPVFQLRS
AF

Nucleotide


Download         Length: 1209 bp        

>NTDB_id=823239 QGQ83_RS14820 WP_281114361.1 3219426..3220634(-) (pilC) [Pseudomonas marginalis strain MGMM3]
ATGAACAACGCTTCAACGATTTACGCCTGGGAAGGCATCAACCGCAAAGGGCGCAGGGTGTCCGGGCAAACCAAAGGGCA
CAACGCAGCCCTGGTCAAGGCACAACTGCGCCAGCAAGGGATCAGCCCCGGTCGTGTGCGCAAGCAATCCCTGCTGCTGC
CAAACCTCACCCCATCAGTCAAAGCGGCTGATATCACACTGTTCACGCGCCAACTGGCTACGCTGCTGAAGGCTGGGGTT
CCACTCCTGCAAGCCTTCGACATCATCAGCGAAGGCGTCGACAATCGCGCTGTGCGTGAACAGGTGATGGGGCTTAAACA
GGCGATCGCCGCCGGCAGCAGCCTGGCTGAGGCACTACGCAAACAACCGCGTCATTTCGATGAGCTGTACTGCAACCTGG
TGGCCGCCGGCGAACAGGCCGGGGCGCTTGAGACACTGCTGGAAAGGGTGGCGATCCACCGGGAAAAGAGTGAACAGCTC
AAGGCCAGGATCAAAAAGGCCATGACCTACCCCATTGCTGTCCTGGTGGTTGCCAGCCTGGTCACCGGCATACTGCTGGT
CCACGTGGTGCCGCAGTTCCAGGCCCTGTTCGCCGGAGTCGACGGCAAACTGCCGGCATTTACCTTGCAAGTGATCGCCC
TGTCGGCGTTCATGCAGCACGCATGGTGGATGCTGGTATTGGGCATAGTCGCGGGAGCCGCTGCGCTGCGCCAGGCCTAT
CGGACCTCGTCGGGGTTTCGCTGCTGGCTGGACACCGGTTTGTTGAAAGCGCCCCTGGCAGGCAAACTGCTGACAAAATC
CGCCGTGGCCCGCTACGCCCGCACGCTCTCCACGACCTTTGCCGCCGGTGTTCCACTGGTCCAGGCATTGGATTCAGTCG
CCGGCGCCGTGGGAAACGACCCGTTCAAACAGGCAATCGAACATATGCGTCACGATGTATCCAACGGCATGCAACTGAAT
CAATCCATGCTCAACAGCGGCCTGTTTCCCGGCATGGCAATCCAACTGACGGCGATCGGCGAAGAGTCGGGCACCCTGGA
ACACATGCTGGAAAAGGTCGCCAACCACTATGAGGCTGACGTGGACAACCAGGTCGACAACCTCACCAGCCTGATGGAGC
CATTGATCATGGTGGTGCTGGGGGGCATCGTCGGCGCTCTGGTCATCGCCATGTACCTGCCGGTCTTCCAGCTGCGGAGT
GCATTTTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(273-394)

Type II secretion system (T2SS), protein F (T2SSF)

(68-191)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

60.202

98.756

0.595
  pilC Acinetobacter baumannii D1279779

53.418

98.259

0.525
  pilC Acinetobacter baylyi ADP1

52.525

98.507

0.517
  pilC Legionella pneumophila strain ERS1305867

48.99

98.507

0.483
  pilC Vibrio cholerae strain A1552

41.895

99.751

0.418
  pilC Vibrio campbellii strain DS40M4

40.355

98.01

0.396
  pilG Neisseria gonorrhoeae MS11

39.005

95.025

0.371
  pilG Neisseria meningitidis 44/76-A

38.743

95.025

0.368
  pilC Thermus thermophilus HB27

36.842

99.254

0.366