Detailed information NTG0823238

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: QGQ83_RS14815
• Genome accession: NZ_CP123957
• Coordinates: 3218563..3219429 (-)
• Length: 288 a.a.
• NCBI ID: WP_065938482.1
• Uniprot ID: -
• Organism: Pseudomonas marginalis strain MGMM3
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3213563..3224429

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
QGQ83_RS14775 (QGQ83_14775)	-	3213984..3215282 (-)	1299	WP_065924079.1	NAD(P)/FAD-dependent oxidoreductase	-
QGQ83_RS14780 (QGQ83_14780)	-	3215343..3215516 (-)	174	WP_016976295.1	DUF3094 family protein	-
QGQ83_RS14785 (QGQ83_14785)	-	3215570..3216199 (-)	630	WP_027604891.1	DUF1780 domain-containing protein	-
QGQ83_RS14790 (QGQ83_14790)	-	3216305..3216772 (+)	468	WP_281114358.1	FAD/FMN-containing dehydrogenase	-
QGQ83_RS14795 (QGQ83_14795)	-	3216769..3217458 (+)	690	WP_281114359.1	energy-coupling factor ABC transporter permease	-
QGQ83_RS14800 (QGQ83_14800)	-	3217534..3217749 (+)	216	WP_003171680.1	hypothetical protein	-
QGQ83_RS14805 (QGQ83_14805)	yacG	3217746..3217946 (-)	201	WP_027604888.1	DNA gyrase inhibitor YacG	-
QGQ83_RS14810 (QGQ83_14810)	coaE	3217943..3218566 (-)	624	WP_281114360.1	dephospho-CoA kinase	-
QGQ83_RS14815 (QGQ83_14815)	pilD	3218563..3219429 (-)	867	WP_065938482.1	A24 family peptidase	Machinery gene
QGQ83_RS14820 (QGQ83_14820)	pilC	3219426..3220634 (-)	1209	WP_281114361.1	type II secretion system F family protein	Machinery gene
QGQ83_RS14825 (QGQ83_14825)	-	3220837..3221247 (+)	411	WP_281114535.1	pilin	-
QGQ83_RS14830 (QGQ83_14830)	-	3221283..3222683 (+)	1401	WP_281114362.1	O-antigen ligase family protein	-
QGQ83_RS14840 (QGQ83_14840)	-	3222955..3223260 (+)	306	WP_027604882.1	DUF6388 family protein	-
QGQ83_RS14845 (QGQ83_14845)	nadC	3223335..3224183 (-)	849	WP_027604881.1	carboxylating nicotinate-nucleotide diphosphorylase	-

Sequence

Protein

• Length: 288 a.a.
• Molecular weight: 31895.05 Da
• Isoelectric Point: 7.4318

>NTDB_id=823238 QGQ83_RS14815 WP_065938482.1 3218563..3219429(-) (pilD) [Pseudomonas marginalis strain MGMM3]
MSLLLNEHPLAFVTIALVLGLIVGSFLNVLVWRLPKMLEREWRAQAHEVLGLPAEPGGPTYNLMHPNSCCPHCDHPIRPW
ENIPLLSYLMLRGRCAHCQGAISPRYPFTELACGLISAWVAWHFGFGWQAAAVLVLSWGLLAMSLIDADHQLLPDVLVLP
LLWLGLIVNSFGLLTTLPDALWGTVIGYMSLWSVFWLFKLVTGKDGMGHGDFKLLALLGAWGGWQILPMTLLMSSLVGVF
VGLILMRLRKTLASTPMPFGPYLAIAGWIALLWGGQITDFYLQSVGFR

Nucleotide

• Length: 867 bp

>NTDB_id=823238 QGQ83_RS14815 WP_065938482.1 3218563..3219429(-) (pilD) [Pseudomonas marginalis strain MGMM3]
TTGAGCCTGCTGCTGAACGAGCACCCATTGGCCTTTGTCACCATCGCGCTGGTACTGGGGCTGATCGTCGGCAGTTTCCT
CAACGTGCTGGTCTGGCGCCTGCCAAAAATGCTCGAACGGGAATGGCGTGCCCAGGCCCATGAAGTGCTCGGCTTGCCTG
CCGAACCTGGCGGGCCGACCTACAACCTGATGCACCCCAACTCATGCTGCCCACACTGTGATCATCCAATCCGGCCGTGG
GAAAATATCCCACTGCTCAGCTACCTGATGCTCAGGGGGCGCTGCGCCCATTGCCAGGGAGCCATCAGCCCCCGCTACCC
TTTCACGGAACTCGCCTGTGGGTTGATCTCGGCCTGGGTCGCCTGGCATTTCGGCTTTGGCTGGCAGGCGGCAGCGGTGC
TGGTGTTGAGTTGGGGGTTGCTGGCAATGAGCCTGATCGACGCAGACCACCAGTTGCTGCCTGATGTGCTGGTACTGCCA
TTGCTGTGGCTGGGGCTGATCGTCAACAGCTTTGGATTACTGACGACATTACCCGACGCACTATGGGGCACCGTGATCGG
CTACATGAGCCTGTGGAGCGTGTTCTGGCTGTTCAAGCTGGTCACCGGCAAAGACGGCATGGGCCACGGTGATTTCAAGT
TGCTGGCCTTGCTCGGCGCCTGGGGCGGCTGGCAGATATTGCCGATGACACTGTTGATGTCGTCGCTGGTGGGGGTGTTT
GTCGGGTTGATCCTGATGCGCCTGCGCAAGACCCTGGCGTCCACGCCGATGCCGTTTGGTCCGTATCTGGCAATTGCCGG
CTGGATTGCATTGCTCTGGGGTGGTCAAATAACCGACTTCTATTTGCAGTCTGTCGGTTTCAGATGA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (134-243)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (18-124)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	52.982	98.958	0.524
pilD	Vibrio campbellii strain DS40M4	49.296	98.611	0.486
pilD	Neisseria gonorrhoeae MS11	50.37	93.75	0.472
pilD	Acinetobacter baumannii D1279779	49.451	94.792	0.469
pilD	Acinetobacter nosocomialis M2	49.451	94.792	0.469