Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   QAO71_RS13070 Genome accession   NZ_CP123445
Coordinates   2773086..2774354 (+) Length   422 a.a.
NCBI ID   WP_280164638.1    Uniprot ID   -
Organism   Halopseudomonas sp. SMJS2     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2768086..2779354
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QAO71_RS13050 (QAO71_13050) - 2768198..2769247 (-) 1050 WP_280164634.1 acyltransferase -
  QAO71_RS13055 (QAO71_13055) - 2769244..2770443 (-) 1200 WP_280164635.1 serine hydrolase domain-containing protein -
  QAO71_RS13060 (QAO71_13060) - 2770521..2770982 (-) 462 WP_280164636.1 pilin -
  QAO71_RS13065 (QAO71_13065) pilB 2771376..2773082 (+) 1707 WP_280164637.1 type IV-A pilus assembly ATPase PilB Machinery gene
  QAO71_RS13070 (QAO71_13070) pilC 2773086..2774354 (+) 1269 WP_280164638.1 type II secretion system F family protein Machinery gene
  QAO71_RS13075 (QAO71_13075) pilD 2774358..2775230 (+) 873 WP_280164639.1 A24 family peptidase Machinery gene
  QAO71_RS13080 (QAO71_13080) coaE 2775529..2776152 (+) 624 WP_280164640.1 dephospho-CoA kinase -
  QAO71_RS13085 (QAO71_13085) yacG 2776149..2776337 (+) 189 WP_036988440.1 DNA gyrase inhibitor YacG -
  QAO71_RS13090 (QAO71_13090) - 2776369..2777415 (+) 1047 WP_280164641.1 Nudix family hydrolase -
  QAO71_RS13095 (QAO71_13095) ispH 2777455..2778402 (-) 948 WP_280164642.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  QAO71_RS13100 (QAO71_13100) fkpB 2778437..2778874 (-) 438 WP_036990253.1 FKBP-type peptidyl-prolyl cis-trans isomerase -

Sequence

Protein


Download         Length: 422 a.a.        Molecular weight: 45955.05 Da        Isoelectric Point: 10.2290

>NTDB_id=821142 QAO71_RS13070 WP_280164638.1 2773086..2774354(+) (pilC) [Halopseudomonas sp. SMJS2]
MAQQAAVKRTRPVAKPAKKAKVEKVYPFKWEGKDRKGVKLSGEIQGTNQALVKAQLRKQGVLVTKIHKKSSLFGPRAKKI
KPLDIAFFTRQLATMMASGVPIVQAFEIIAEGAANPNFAKLINEIKTDVASGNTLAASLAKHPQYFDDLFCNLVESGEQS
GRLESLLDRIATYKEKTEALKAKIKKAMTYPIAVVVVAVIVTAILLLKVVPQFKDVFSSFGADLPAFTLMVIGLSEWLQS
WWFIILVGLILLGLGYRQAHRRSKPFRDAQDRTLLKVPIVGQIIYEAAVARYARTLSTTFAAGVPLVQALDSVAGAAGNV
VFYNAVNNIKQDVSAGTQLNFAMRTTNVFPTLAVQMAGIGEESGNLDGMLEKVADFYEAEVDNKVDNLTTLLEPMIMSVL
GVLIGGLIIAMYLPIFQLGAVV

Nucleotide


Download         Length: 1269 bp        

>NTDB_id=821142 QAO71_RS13070 WP_280164638.1 2773086..2774354(+) (pilC) [Halopseudomonas sp. SMJS2]
ATGGCCCAGCAAGCAGCAGTGAAAAGGACCAGGCCGGTCGCGAAACCCGCGAAGAAAGCCAAGGTTGAGAAGGTCTACCC
GTTCAAGTGGGAAGGCAAGGATCGCAAGGGCGTCAAGCTGTCCGGTGAGATACAGGGCACTAACCAGGCTCTGGTGAAAG
CGCAACTGCGCAAGCAAGGCGTGCTGGTCACCAAGATCCACAAGAAGTCCTCCCTGTTCGGCCCGCGCGCCAAGAAGATC
AAGCCGCTGGATATTGCCTTCTTCACTCGCCAATTGGCGACCATGATGGCGTCGGGCGTGCCCATTGTGCAGGCGTTCGA
GATTATTGCCGAGGGCGCTGCCAACCCCAATTTCGCCAAGCTGATCAACGAGATCAAGACCGATGTGGCCTCGGGTAATA
CCCTGGCGGCGTCATTGGCCAAGCATCCGCAATACTTCGACGATCTGTTCTGCAACCTGGTGGAGTCCGGCGAACAATCG
GGCCGGCTGGAATCGCTGCTGGACCGTATCGCTACCTATAAGGAAAAGACCGAGGCGCTGAAGGCCAAGATCAAGAAGGC
TATGACCTACCCCATCGCGGTGGTAGTGGTGGCGGTGATCGTGACGGCGATCCTGTTGCTCAAGGTGGTGCCGCAGTTCA
AGGACGTGTTCTCCAGCTTCGGTGCCGATCTTCCGGCCTTTACGCTGATGGTGATCGGTTTATCGGAATGGCTGCAGTCA
TGGTGGTTCATCATATTGGTCGGACTGATACTGCTGGGGTTGGGCTATCGTCAGGCCCATCGACGCTCCAAGCCATTCCG
TGATGCCCAAGATCGGACCCTGCTCAAGGTACCGATCGTGGGGCAGATCATCTATGAAGCGGCAGTAGCCCGTTATGCAC
GCACTCTGTCCACCACCTTCGCGGCCGGTGTACCGCTGGTACAGGCACTGGACTCCGTGGCCGGGGCGGCGGGCAACGTG
GTGTTCTACAACGCCGTAAACAATATCAAGCAGGATGTATCTGCCGGTACCCAGCTCAACTTCGCCATGCGTACCACCAA
TGTGTTTCCCACCTTGGCTGTACAGATGGCCGGTATTGGTGAGGAGTCGGGTAACCTCGACGGCATGCTGGAGAAGGTGG
CGGACTTCTACGAAGCCGAAGTGGACAACAAGGTGGACAACCTCACTACCCTGCTCGAACCGATGATCATGTCGGTGCTG
GGTGTGCTGATTGGTGGTCTGATCATTGCCATGTACTTGCCAATCTTCCAGCTGGGCGCCGTTGTCTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(293-414)

Type II secretion system (T2SS), protein F (T2SSF)

(88-211)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

69.949

93.839

0.656
  pilC Acinetobacter baylyi ADP1

59.559

96.682

0.576
  pilC Acinetobacter baumannii D1279779

58.69

94.076

0.552
  pilC Legionella pneumophila strain ERS1305867

54.293

93.839

0.509
  pilG Neisseria meningitidis 44/76-A

42.752

96.445

0.412
  pilG Neisseria gonorrhoeae MS11

42.752

96.445

0.412
  pilC Vibrio campbellii strain DS40M4

41.414

93.839

0.389
  pilC Vibrio cholerae strain A1552

40.909

93.839

0.384