Detailed information    

insolico Bioinformatically predicted

Overview

Name   chiS   Type   Regulator
Locus tag   QEG98_RS32420 Genome accession   NZ_CP123278
Coordinates   7295811..7296035 (-) Length   74 a.a.
NCBI ID   WP_316568000.1    Uniprot ID   -
Organism   Myxococcus sp. MxC21-1     
Function   chitin sensor (predicted from homology)   
Competence regulation

Genomic Context

Location: 7290811..7301035
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QEG98_RS32400 (QEG98_32890) - 7291197..7292567 (-) 1371 WP_316564028.1 hypothetical protein -
  QEG98_RS32405 (QEG98_32895) - 7292996..7293568 (-) 573 WP_316564029.1 hypothetical protein -
  QEG98_RS32410 (QEG98_32900) - 7293694..7295187 (-) 1494 WP_316564030.1 carboxypeptidase M32 -
  QEG98_RS32415 (QEG98_32905) - 7295258..7295800 (+) 543 WP_026114254.1 hypothetical protein -
  QEG98_RS32420 (QEG98_32910) chiS 7295811..7296035 (-) 225 WP_316568000.1 sensor histidine kinase Regulator
  QEG98_RS32425 - 7296349..7296864 (-) 516 Protein_6367 histidine kinase dimerization/phospho-acceptor domain-containing protein -
  QEG98_RS32430 (QEG98_32920) - 7297139..7297399 (-) 261 WP_316564031.1 hypothetical protein -
  QEG98_RS32435 (QEG98_32925) - 7297660..7299285 (-) 1626 WP_316564032.1 peptide chain release factor 3 -
  QEG98_RS32440 (QEG98_32930) - 7299401..7299796 (+) 396 WP_090492221.1 RidA family protein -
  QEG98_RS32445 (QEG98_32935) - 7299869..7300831 (+) 963 WP_316564033.1 hypothetical protein -

Sequence

Protein


Download         Length: 74 a.a.        Molecular weight: 7783.78 Da        Isoelectric Point: 6.6340

>NTDB_id=820337 QEG98_RS32420 WP_316568000.1 7295811..7296035(-) (chiS) [Myxococcus sp. MxC21-1]
MCVFVKDSGPGIPAEDAPHLFERFWRASHSPGRGTGLGLSIAWSLVAAHGGTLHVESHEGQGSTFSFTLPVALP

Nucleotide


Download         Length: 225 bp        

>NTDB_id=820337 QEG98_RS32420 WP_316568000.1 7295811..7296035(-) (chiS) [Myxococcus sp. MxC21-1]
GTGTGCGTCTTCGTGAAGGACTCCGGGCCCGGCATCCCCGCCGAGGACGCACCGCACCTCTTCGAGCGCTTCTGGCGGGC
CAGCCATTCACCGGGACGCGGCACGGGGCTGGGGCTGAGCATCGCCTGGAGTCTGGTGGCCGCGCACGGCGGGACGCTCC
ACGTGGAGAGCCACGAAGGGCAGGGGAGCACCTTCTCCTTCACCCTGCCCGTGGCCCTGCCCTGA

Domains

Predicted by InterproScan.

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(3-71)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  chiS Vibrio cholerae strain A1552

50.685

98.649

0.5
  covS Lactococcus lactis subsp. lactis strain DGCC12653

49.275

93.243

0.459
  micB Streptococcus pneumoniae Cp1015

43.836

98.649

0.432
  vicK Streptococcus mutans UA159

46.377

93.243

0.432
  covS Streptococcus salivarius strain HSISS4

40.26

100

0.419
  luxQ Vibrio cholerae strain A1552

40.789

100

0.419
  ciaH Streptococcus pneumoniae Rx1

36

100

0.365
  ciaH Streptococcus pneumoniae D39

36

100

0.365
  ciaH Streptococcus pneumoniae R6

36

100

0.365
  ciaH Streptococcus pneumoniae TIGR4

36

100

0.365
  letS Legionella pneumophila strain ERS1305867

38.571

94.595

0.365