Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   P7V53_RS28475 Genome accession   NZ_CP123228
Coordinates   6009782..6011005 (+) Length   407 a.a.
NCBI ID   WP_280152854.1    Uniprot ID   -
Organism   Piscinibacter sp. XHJ-5     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 6004782..6016005
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P7V53_RS28445 - 6005469..6005657 (-) 189 WP_280152850.1 DUF5668 domain-containing protein -
  P7V53_RS28450 rpmA 6005771..6006028 (-) 258 WP_280152851.1 50S ribosomal protein L27 -
  P7V53_RS28455 rplU 6006054..6006365 (-) 312 WP_280156638.1 50S ribosomal protein L21 -
  P7V53_RS28460 ispB 6006589..6007530 (+) 942 WP_280152852.1 octaprenyl diphosphate synthase -
  P7V53_RS28470 pilB 6008002..6009720 (+) 1719 WP_280152853.1 type IV-A pilus assembly ATPase PilB Machinery gene
  P7V53_RS28475 pilC 6009782..6011005 (+) 1224 WP_280152854.1 type II secretion system F family protein Machinery gene
  P7V53_RS28480 pilD 6011002..6011853 (+) 852 WP_280152855.1 A24 family peptidase Machinery gene
  P7V53_RS28485 coaE 6011870..6012502 (+) 633 WP_280152856.1 dephospho-CoA kinase -
  P7V53_RS28490 zapD 6012579..6013334 (+) 756 WP_280152857.1 cell division protein ZapD -
  P7V53_RS28495 - 6013346..6013549 (+) 204 WP_280152858.1 DNA gyrase inhibitor YacG -
  P7V53_RS28500 - 6013562..6014482 (-) 921 WP_280152859.1 caspase family protein -
  P7V53_RS28505 groES 6014725..6015015 (+) 291 WP_280152860.1 co-chaperone GroES -

Sequence

Protein


Download         Length: 407 a.a.        Molecular weight: 44500.40 Da        Isoelectric Point: 9.8177

>NTDB_id=820105 P7V53_RS28475 WP_280152854.1 6009782..6011005(+) (pilC) [Piscinibacter sp. XHJ-5]
MATALAAKQNIRDLVFEWEGKDKNGKIVRGEMRAGGEAMVSASLRRQGILTTKVKKRRTSGGRAIKQKDIAIFTRQLATM
MRAGVPLIQSFDIVARGSANPKVTRLLTDIRSDIETGTSLSAAFRKHPLYFDSLYCNLVEAGEAGGILEALLERLAIYQE
KTMAIKNKIKSAMIYPVAVLVVAFVVLAVIMIFVIPAFKEVFTSFGADLPAPTLLVIAMSEFFVKYWWAIFGFLIGGTYF
FFQSWRRSEKMQKMMDRLLLRLPVFGDLVNKSAVARWTRTLSTMFAAGVPLVEALDSVGGAAGNAVFAEATEQIQKDVST
GTALTTSMHSTGVFPIMVLQMVAIGEESGSLDQMLGKAAEFYEDEVDEAVKGLSSLMEPFIIVILGTLIGGIVVSMYLPI
FKIGSVV

Nucleotide


Download         Length: 1224 bp        

>NTDB_id=820105 P7V53_RS28475 WP_280152854.1 6009782..6011005(+) (pilC) [Piscinibacter sp. XHJ-5]
ATGGCGACTGCACTAGCCGCAAAGCAAAACATCAGGGACCTCGTCTTCGAATGGGAAGGCAAGGACAAGAACGGGAAGAT
CGTGCGCGGCGAGATGCGTGCCGGCGGCGAAGCCATGGTCAGCGCCAGCCTGCGGCGCCAGGGCATCCTGACCACCAAGG
TCAAGAAGCGCCGAACCAGCGGCGGCCGTGCGATCAAGCAGAAGGACATCGCCATCTTCACGCGCCAGCTGGCGACGATG
ATGCGTGCCGGCGTGCCTCTGATCCAGTCGTTCGACATCGTCGCCCGCGGCAGCGCGAATCCCAAGGTCACCCGACTGCT
CACCGACATCCGCAGCGACATCGAGACCGGCACCAGCCTGTCCGCGGCGTTCCGCAAGCACCCGTTGTATTTCGATTCGC
TGTACTGCAACCTGGTCGAAGCCGGCGAGGCAGGCGGCATCCTGGAGGCGCTGCTCGAGCGGCTGGCGATCTACCAGGAA
AAGACGATGGCCATCAAGAACAAGATCAAGTCGGCCATGATCTACCCGGTGGCGGTTCTGGTGGTCGCCTTCGTGGTGCT
CGCGGTCATCATGATCTTCGTGATTCCGGCGTTCAAGGAAGTCTTCACCTCCTTCGGCGCCGACCTGCCGGCACCGACGC
TGCTGGTCATCGCGATGTCTGAGTTCTTCGTCAAGTACTGGTGGGCCATCTTCGGCTTCCTGATCGGAGGCACGTACTTC
TTTTTCCAATCGTGGCGCCGCTCCGAGAAGATGCAGAAAATGATGGACCGCTTGCTGCTGCGGCTTCCCGTGTTCGGCGA
CCTCGTCAACAAGTCGGCGGTGGCACGGTGGACGCGCACGCTGTCGACGATGTTCGCTGCCGGCGTTCCCCTCGTCGAAG
CGCTCGACTCGGTGGGCGGCGCGGCCGGCAATGCCGTTTTCGCCGAAGCGACCGAGCAGATCCAGAAAGACGTCTCGACC
GGCACCGCGCTCACCACATCGATGCATTCGACCGGCGTGTTTCCGATCATGGTCCTGCAGATGGTCGCGATCGGCGAAGA
GTCGGGCTCGCTCGACCAGATGCTGGGCAAGGCGGCAGAGTTCTATGAGGACGAAGTCGACGAGGCGGTGAAAGGCCTGT
CGAGCCTGATGGAGCCCTTCATCATCGTGATTCTCGGTACGTTGATCGGCGGCATCGTCGTATCGATGTACCTCCCGATC
TTCAAGATCGGCTCCGTGGTGTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(277-399)

Type II secretion system (T2SS), protein F (T2SSF)

(73-196)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

53.96

99.263

0.536
  pilG Neisseria meningitidis 44/76-A

53.333

99.509

0.531
  pilG Neisseria gonorrhoeae MS11

53.333

99.509

0.531
  pilC Legionella pneumophila strain ERS1305867

51.759

97.789

0.506
  pilC Acinetobacter baylyi ADP1

49.02

100

0.491
  pilC Acinetobacter baumannii D1279779

48.111

97.543

0.469
  pilC Vibrio cholerae strain A1552

40.152

97.297

0.391
  pilC Vibrio campbellii strain DS40M4

39.401

98.526

0.388
  pilC Thermus thermophilus HB27

39.348

98.034

0.386