Detailed information NTG0815775

Bioinformatically predicted

Overview

• Name: pilC
• Type: Machinery gene
• Locus tag: M0M55_RS23740
• Genome accession: NZ_CP136800
• Coordinates: 5105489..5106706 (+)
• Length: 405 a.a.
• NCBI ID: WP_003161763.1
• Uniprot ID: -
• Organism: Pseudomonas aeruginosa strain A6-17
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 5100489..5111706

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
M0M55_RS23715 (M0M55_23715)	nadC	5100601..5101449 (+)	849	WP_021264134.1	carboxylating nicotinate-nucleotide diphosphorylase	-
M0M55_RS23725 (M0M55_23725)	-	5101629..5103008 (-)	1380	WP_231280141.1	O-antigen ligase family protein	-
M0M55_RS23730 (M0M55_23730)	pilA/pilAI	5103090..5103554 (-)	465	WP_021205141.1	pilin	Machinery gene
M0M55_RS23735 (M0M55_23735)	pilB	5103785..5105485 (+)	1701	WP_003107297.1	type IV-A pilus assembly ATPase PilB	Machinery gene
M0M55_RS23740 (M0M55_23740)	pilC	5105489..5106706 (+)	1218	WP_003161763.1	type II secretion system F family protein	Machinery gene
M0M55_RS23745 (M0M55_23745)	pilD	5106707..5107579 (+)	873	WP_108083860.1	type IV prepilin peptidase/methyltransferase PilD	Machinery gene
M0M55_RS23750 (M0M55_23750)	coaE	5107576..5108187 (+)	612	WP_003094654.1	dephospho-CoA kinase	-
M0M55_RS23755 (M0M55_23755)	yacG	5108184..5108384 (+)	201	WP_017148551.1	DNA gyrase inhibitor YacG	-
M0M55_RS23760 (M0M55_23760)	-	5108421..5108630 (-)	210	WP_003094660.1	hypothetical protein	-
M0M55_RS23765 (M0M55_23765)	-	5108736..5109425 (-)	690	WP_108083861.1	energy-coupling factor ABC transporter permease	-
M0M55_RS23770 (M0M55_23770)	-	5109422..5109892 (-)	471	WP_003094664.1	hypothetical protein	-
M0M55_RS23775 (M0M55_23775)	-	5109889..5110314 (-)	426	WP_317362699.1	GNAT family N-acetyltransferase	-
M0M55_RS23780 (M0M55_23780)	-	5110447..5111076 (+)	630	WP_003094668.1	DUF1780 domain-containing protein	-
M0M55_RS23785 (M0M55_23785)	-	5111073..5111522 (+)	450	WP_023100233.1	MOSC domain-containing protein	-

Sequence

Protein

• Length: 405 a.a.
• Molecular weight: 43998.80 Da
• Isoelectric Point: 9.8103

>NTDB_id=815775 M0M55_RS23740 WP_003161763.1 5105489..5106706(+) (pilC) [Pseudomonas aeruginosa strain A6-17]
MADKALKTSVFVWEGTDKKGTKVKGELSSQNPTLVKAQLRKQGITPVKVRKKGISLLGAGKKIKPMDIALFTRQMSTMMA
AGVPLLQSFDIISEGFDNPNMRKLVEEIKQEVAGGNSLANSLRKKPQYFDSLYCNLVDAGEQSGALETLLDRVATYKEKT
EALKAKIKKAMTYPIAVIVVAIIVSAILLIKVVPQFQSVFEGFGAELPAFTQMVINISNVLQEWWLLVLLMMGGAGFLLN
HAYKRSEKFRDATDRTVLKLPIVGAILYKSAVARYARTLSTTFAAGVPLVEALDSVSGATGNVVFRDAVGKIKQDVSTGM
QLNFSMRTTNIFPSMAIQMTAIGEESGALDDMLAKVAGFYEQEVDNAVDNLTALMEPMIMAVLGVLVGGLIIAMYLPIFQ
LGNVV

Nucleotide

• Length: 1218 bp

>NTDB_id=815775 M0M55_RS23740 WP_003161763.1 5105489..5106706(+) (pilC) [Pseudomonas aeruginosa strain A6-17]
ATGGCGGACAAAGCGTTAAAGACCAGTGTCTTCGTATGGGAAGGCACTGACAAGAAAGGCACCAAGGTCAAGGGCGAGCT
GTCCAGCCAAAACCCGACCCTGGTCAAGGCGCAACTGCGCAAGCAGGGCATCACGCCGGTCAAGGTCCGCAAGAAAGGCA
TCTCCCTGCTGGGGGCGGGGAAGAAGATCAAGCCTATGGACATCGCCCTGTTCACCCGCCAGATGTCCACCATGATGGCC
GCCGGCGTGCCACTGCTGCAGTCGTTCGACATCATCAGCGAAGGCTTCGACAATCCGAACATGCGCAAGCTGGTGGAGGA
GATCAAGCAGGAAGTCGCCGGCGGCAACAGCCTGGCCAACTCGCTGCGCAAGAAGCCGCAGTACTTCGACTCGCTCTACT
GCAACCTGGTGGACGCCGGCGAACAATCCGGCGCCCTGGAAACCCTGCTCGACCGGGTCGCCACCTACAAGGAAAAGACC
GAGGCGCTGAAGGCCAAGATCAAGAAGGCCATGACCTACCCAATCGCGGTGATCGTCGTCGCCATCATCGTTTCGGCGAT
CCTACTGATCAAGGTGGTGCCGCAGTTCCAGTCGGTGTTCGAGGGCTTCGGCGCCGAACTGCCGGCCTTCACCCAAATGG
TCATCAATATCTCCAACGTGCTCCAGGAATGGTGGCTCCTGGTACTGCTGATGATGGGCGGCGCCGGCTTCCTGCTGAAC
CACGCCTACAAGCGTTCGGAGAAGTTCCGCGACGCCACCGACCGCACGGTACTGAAGCTGCCGATCGTCGGCGCCATCCT
CTACAAATCCGCCGTGGCACGCTACGCGCGGACGCTGTCGACCACCTTCGCCGCCGGCGTGCCATTGGTGGAAGCCCTCG
ACTCGGTTTCCGGCGCCACCGGCAACGTGGTGTTCAGGGACGCGGTGGGCAAGATCAAGCAGGACGTGTCCACCGGCATG
CAGCTGAACTTCTCCATGCGCACCACCAACATCTTCCCCAGCATGGCCATCCAGATGACCGCCATCGGCGAGGAATCGGG
CGCGCTGGACGACATGCTGGCCAAGGTCGCTGGCTTCTACGAGCAGGAAGTGGATAATGCCGTGGACAACCTGACCGCCC
TGATGGAACCGATGATCATGGCGGTCCTCGGGGTCCTGGTCGGTGGCCTGATCATCGCCATGTACCTGCCGATCTTCCAG
CTGGGCAACGTCGTCTAA

Domains

Predicted by InterProScan.

• Type II secretion system (T2SS), protein F (T2SSF) (276-397)

• Type II secretion system (T2SS), protein F (T2SSF) (71-194)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilC	Pseudomonas stutzeri DSM 10701	78.765	100	0.788
pilC	Acinetobacter baylyi ADP1	61.275	100	0.617
pilC	Acinetobacter baumannii D1279779	60.644	99.753	0.605
pilC	Legionella pneumophila strain ERS1305867	54.293	97.778	0.531
pilG	Neisseria gonorrhoeae MS11	46.287	99.753	0.462
pilG	Neisseria meningitidis 44/76-A	45.771	99.259	0.454
pilC	Vibrio cholerae strain A1552	41.728	100	0.417
pilC	Vibrio campbellii strain DS40M4	40.898	99.012	0.405
pilC	Thermus thermophilus HB27	38.155	99.012	0.378