Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   RYQ61_RS03375 Genome accession   NZ_CP136799
Coordinates   645810..647078 (-) Length   422 a.a.
NCBI ID   WP_048785785.1    Uniprot ID   -
Organism   Streptococcus intermedius strain XH2169     
Function   facilitate localization of RecA (predicted from homology)   
Homologous recombination

Genomic Context

Location: 640810..652078
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RYQ61_RS03340 (RYQ61_03340) - 641531..641836 (-) 306 WP_003075274.1 DUF1292 domain-containing protein -
  RYQ61_RS03345 (RYQ61_03345) ruvX 641854..642273 (-) 420 WP_021003313.1 Holliday junction resolvase RuvX -
  RYQ61_RS03350 (RYQ61_03350) - 642273..642539 (-) 267 WP_009569646.1 IreB family regulatory phosphoprotein -
  RYQ61_RS03355 (RYQ61_03355) - 642845..643402 (-) 558 WP_003077293.1 SP0191 family lipoprotein -
  RYQ61_RS03360 (RYQ61_03360) - 643916..644050 (-) 135 WP_257995703.1 hypothetical protein -
  RYQ61_RS03365 (RYQ61_03365) spx 644132..644530 (-) 399 WP_003026638.1 transcriptional regulator Spx -
  RYQ61_RS03370 (RYQ61_03370) recA 644616..645761 (-) 1146 WP_003077215.1 recombinase RecA -
  RYQ61_RS03375 (RYQ61_03375) cinA 645810..647078 (-) 1269 WP_048785785.1 competence/damage-inducible protein A Machinery gene
  RYQ61_RS03380 (RYQ61_03380) - 647214..647387 (-) 174 Protein_646 CPBP family intramembrane glutamate endopeptidase -
  RYQ61_RS03385 (RYQ61_03385) - 647392..647946 (-) 555 WP_048785788.1 DNA-3-methyladenine glycosylase I -
  RYQ61_RS03390 (RYQ61_03390) ruvA 647956..648546 (-) 591 WP_048785790.1 Holliday junction branch migration protein RuvA Machinery gene
  RYQ61_RS03395 (RYQ61_03395) - 648716..649219 (+) 504 WP_048785914.1 helix-turn-helix domain-containing protein -
  RYQ61_RS03400 (RYQ61_03400) - 649203..649712 (+) 510 Protein_650 RDD family protein -
  RYQ61_RS03405 (RYQ61_03405) hexB 649761..651707 (-) 1947 WP_102568435.1 DNA mismatch repair endonuclease MutL Machinery gene

Sequence

Protein


Download         Length: 422 a.a.        Molecular weight: 45511.04 Da        Isoelectric Point: 6.6649

>NTDB_id=815646 RYQ61_RS03375 WP_048785785.1 645810..647078(-) (cinA) [Streptococcus intermedius strain XH2169]
MKAEIIAVGTEILTGQIVNTNAQFLSEKLAGLGVDVYFQTAVGDNEDRLLSILEIARDRSNLVILTGGLGPTEDDLTKQT
LSKFLNRRLVFHQVAVEKLNRFFSSRPDYTRTPNNERQAQIVEGSTPLRNETGLAVGGVVEVSGVTYVVLPGPPSELKPM
VNNELVPLLATGQKLYSRVLRFFGIGESQLVTLLGNLIDTQTDPTIAPYAKTGEVTLRLSTKASSQKEADVKFAHLEKKI
LAVQTFEKQQLADLFYAYGDDNSLGQTAFELLKKAGKTVTAAESLTAGLFQATLANFSGASKVFGGGFVTYGIEEKSQML
GIPLADLEMHGVVSAYTAEKMATQARKLTASDYAVSLTGVAGPDSLEGHPAGTVYIGLATADNVQSIQVNIAGRSRTDVR
KIAVLHAFNLLRKTLLKNENML

Nucleotide


Download         Length: 1269 bp        

>NTDB_id=815646 RYQ61_RS03375 WP_048785785.1 645810..647078(-) (cinA) [Streptococcus intermedius strain XH2169]
ATGAAAGCAGAAATTATTGCTGTGGGTACTGAGATTTTGACTGGTCAGATTGTCAATACGAATGCTCAATTTTTATCTGA
AAAATTAGCGGGCTTGGGAGTAGATGTCTATTTCCAGACAGCGGTTGGAGATAATGAAGATCGTCTGTTATCCATTTTAG
AAATAGCTAGAGATCGTAGTAATTTAGTTATCTTGACAGGTGGTTTAGGTCCGACTGAAGACGACTTAACCAAGCAGACT
TTGTCAAAATTTTTGAATCGTAGGCTAGTCTTTCATCAAGTAGCTGTTGAAAAATTGAATCGTTTCTTCTCCAGCCGACC
GGACTATACTCGAACACCAAATAATGAGCGACAAGCTCAGATAGTAGAAGGGTCGACTCCTCTACGAAATGAAACCGGAC
TTGCAGTTGGTGGCGTTGTTGAAGTCAGTGGTGTGACTTATGTTGTTCTACCTGGCCCCCCTAGTGAACTAAAGCCTATG
GTAAACAATGAGTTGGTTCCGCTTTTAGCAACTGGCCAAAAATTGTATTCGAGAGTCTTGCGTTTCTTTGGTATTGGGGA
GAGTCAATTAGTCACCCTTTTAGGAAACTTGATTGATACTCAGACGGATCCGACCATTGCTCCTTATGCTAAGACGGGAG
AAGTGACGTTGCGATTGTCGACCAAGGCCAGCAGTCAAAAGGAAGCAGATGTTAAGTTTGCTCATCTGGAAAAGAAAATT
TTAGCAGTACAGACTTTTGAGAAACAACAATTAGCCGACCTTTTCTATGCTTATGGAGATGACAATTCTCTGGGACAGAC
AGCTTTTGAATTGTTGAAGAAAGCAGGCAAAACAGTCACAGCAGCTGAAAGTCTGACTGCGGGACTTTTTCAAGCGACTT
TAGCAAATTTTTCTGGAGCATCCAAGGTCTTTGGAGGTGGCTTTGTTACTTATGGCATAGAGGAGAAGAGTCAAATGTTA
GGCATTCCATTGGCAGATTTAGAAATGCATGGGGTAGTCTCAGCTTATACAGCAGAGAAAATGGCTACGCAAGCTAGGAA
ATTGACTGCTAGTGACTATGCAGTGAGTTTGACTGGAGTAGCAGGTCCAGATAGTTTAGAAGGCCATCCAGCAGGAACTG
TTTATATTGGCTTGGCAACTGCAGATAACGTTCAGTCTATTCAGGTTAATATTGCGGGGCGCAGTCGGACGGATGTACGT
AAAATAGCTGTGTTACATGCTTTCAATTTGTTGCGAAAAACTTTATTAAAAAATGAGAATATGCTATAA

Domains

Predicted by InterProScan.

Competence-damaged protein (CinA)

(263-415)

Damage-inducible protein CinA KH domain (CinA_KH)

(177-240)

Probable molybdopterin binding domain (MoCF_biosynth)

(5-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Streptococcus mitis SK321

75.12

99.052

0.744
  cinA Streptococcus pneumoniae TIGR4

73.684

99.052

0.73
  cinA Streptococcus mitis NCTC 12261

73.684

99.052

0.73
  cinA Streptococcus pneumoniae Rx1

73.445

99.052

0.727
  cinA Streptococcus pneumoniae R36A

73.445

99.052

0.727
  cinA Streptococcus pneumoniae R6

73.445

99.052

0.727
  cinA Streptococcus pneumoniae D39

73.206

99.052

0.725
  cinA Streptococcus mutans UA159

70.922

100

0.711
  cinA Streptococcus suis isolate S10

54.087

98.578

0.533
  cinA Bacillus subtilis subsp. subtilis str. 168

46.411

99.052

0.46