Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   M2042_RS25130 Genome accession   NZ_AP023187
Coordinates   2830392..2830859 (+) Length   155 a.a.
NCBI ID   WP_345892467.1    Uniprot ID   -
Organism   Vibrio alginolyticus strain HLBS-07     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2825392..2835859
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M2042_RS13520 (HLBS07_26090) ampD 2825685..2826236 (-) 552 WP_042521337.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -
  M2042_RS13525 (HLBS07_26100) nadC 2826329..2827216 (+) 888 WP_248525338.1 carboxylating nicotinate-nucleotide diphosphorylase -
  M2042_RS13530 (HLBS07_26110) - 2827478..2827921 (+) 444 WP_064354289.1 pilin -
  M2042_RS13535 (HLBS07_26120) pilB 2827928..2829613 (+) 1686 WP_104979679.1 type IV-A pilus assembly ATPase PilB Machinery gene
  M2042_RS25125 - 2829871..2830160 (+) 290 Protein_2548 type II secretion system F family protein -
  M2042_RS25130 pilC 2830392..2830859 (+) 468 WP_345892467.1 type II secretion system F family protein Machinery gene
  M2042_RS13545 (HLBS07_26150) pilD 2830924..2831793 (+) 870 WP_025768182.1 A24 family peptidase Machinery gene
  M2042_RS13550 (HLBS07_26160) coaE 2831794..2832408 (+) 615 WP_017635920.1 dephospho-CoA kinase -
  M2042_RS13555 (HLBS07_26170) zapD 2832436..2833176 (+) 741 WP_005373086.1 cell division protein ZapD -
  M2042_RS13560 (HLBS07_26180) yacG 2833335..2833529 (+) 195 WP_017635922.1 DNA gyrase inhibitor YacG -
  M2042_RS13565 (HLBS07_26190) rplS 2834184..2834537 (-) 354 WP_005379971.1 50S ribosomal protein L19 -
  M2042_RS13570 (HLBS07_26200) trmD 2834579..2835340 (-) 762 WP_017635923.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -

Sequence

Protein


Download         Length: 155 a.a.        Molecular weight: 16963.12 Da        Isoelectric Point: 5.8423

>NTDB_id=81560 M2042_RS25130 WP_345892467.1 2830392..2830859(+) (pilC) [Vibrio alginolyticus strain HLBS-07]
MLNRSVLKFPVLGPVLSKAAIAKFSRTLATSFTAGIPILTSLKTTSKTSGNLHYQLAIEEVYRDTAAGMPMYVAMRNCNV
FPELVLQMVMIGEESGRLDDMLNKVATIYEFEVDNTVDNLSKILEPLIIVFLGIVVGGLVTAMYLPIFNLMSVLG

Nucleotide


Download         Length: 468 bp        

>NTDB_id=81560 M2042_RS25130 WP_345892467.1 2830392..2830859(+) (pilC) [Vibrio alginolyticus strain HLBS-07]
ATGCTCAACCGCTCTGTGCTTAAATTTCCTGTCCTGGGCCCTGTATTATCAAAAGCCGCTATCGCCAAATTTAGTCGAAC
ACTCGCCACAAGCTTTACAGCGGGCATTCCAATTCTAACCAGTTTAAAAACTACATCAAAAACATCAGGAAACTTGCACT
ATCAACTCGCCATAGAAGAAGTTTACCGTGATACCGCCGCAGGTATGCCAATGTATGTAGCCATGCGCAACTGTAATGTG
TTCCCTGAATTGGTGTTACAAATGGTTATGATCGGTGAAGAGTCTGGTCGACTTGACGATATGCTCAATAAAGTTGCAAC
AATCTACGAGTTTGAAGTCGACAACACCGTCGACAACCTTAGTAAAATTCTAGAGCCACTAATTATCGTTTTTTTAGGTA
TCGTTGTTGGCGGATTAGTGACAGCAATGTACTTGCCAATCTTTAACTTAATGAGTGTATTGGGCTAG

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(24-146)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Vibrio campbellii strain DS40M4

91.447

98.065

0.897
  pilC Vibrio cholerae strain A1552

83.66

98.71

0.826
  pilC Legionella pneumophila strain ERS1305867

52.941

98.71

0.523
  pilC Acinetobacter baumannii D1279779

51.634

98.71

0.51
  pilC Acinetobacter baylyi ADP1

50.98

98.71

0.503
  pilG Neisseria gonorrhoeae MS11

48.993

96.129

0.471
  pilG Neisseria meningitidis 44/76-A

48.322

96.129

0.465
  pilC Pseudomonas stutzeri DSM 10701

46.753

99.355

0.465
  pilC Thermus thermophilus HB27

41.29

100

0.413

Multiple sequence alignment