Detailed information NTG0081541

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: M2042_RS13545
• Genome accession: NZ_AP023187
• Coordinates: 2830924..2831793 (+)
• Length: 289 a.a.
• NCBI ID: WP_025768182.1
• Uniprot ID: A0AA36UQF6
• Organism: Vibrio alginolyticus strain HLBS-07
• Function: type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2825924..2836793

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
M2042_RS13525 (HLBS07_26100)	nadC	2826329..2827216 (+)	888	WP_248525338.1	carboxylating nicotinate-nucleotide diphosphorylase	-
M2042_RS13530 (HLBS07_26110)	-	2827478..2827921 (+)	444	WP_064354289.1	pilin	-
M2042_RS13535 (HLBS07_26120)	pilB	2827928..2829613 (+)	1686	WP_104979679.1	type IV-A pilus assembly ATPase PilB	Machinery gene
M2042_RS25125	-	2829871..2830160 (+)	290	Protein_2548	type II secretion system F family protein	-
M2042_RS25130	pilC	2830392..2830859 (+)	468	WP_345892467.1	type II secretion system F family protein	Machinery gene
M2042_RS13545 (HLBS07_26150)	pilD	2830924..2831793 (+)	870	WP_025768182.1	A24 family peptidase	Machinery gene
M2042_RS13550 (HLBS07_26160)	coaE	2831794..2832408 (+)	615	WP_017635920.1	dephospho-CoA kinase	-
M2042_RS13555 (HLBS07_26170)	zapD	2832436..2833176 (+)	741	WP_005373086.1	cell division protein ZapD	-
M2042_RS13560 (HLBS07_26180)	yacG	2833335..2833529 (+)	195	WP_017635922.1	DNA gyrase inhibitor YacG	-
M2042_RS13565 (HLBS07_26190)	rplS	2834184..2834537 (-)	354	WP_005379971.1	50S ribosomal protein L19	-
M2042_RS13570 (HLBS07_26200)	trmD	2834579..2835340 (-)	762	WP_017635923.1	tRNA (guanosine(37)-N1)-methyltransferase TrmD	-
M2042_RS13575 (HLBS07_26210)	rimM	2835368..2835916 (-)	549	WP_005379964.1	ribosome maturation factor RimM	-
M2042_RS13580 (HLBS07_26220)	rpsP	2835946..2836194 (-)	249	WP_005379962.1	30S ribosomal protein S16	-

Sequence

Protein

• Length: 289 a.a.
• Molecular weight: 32597.78 Da
• Isoelectric Point: 7.0197

>NTDB_id=81541 M2042_RS13545 WP_025768182.1 2830924..2831793(+) (pilD) [Vibrio alginolyticus strain HLBS-07]
MEVFQYYPWLFVVFATIFGLIVGSFLNVVIYRLPKIMELEWRRECAESFPEYKIEPPKEVLTLSVPRSSCQKCATPIRIR
DNIPVISWLLLKGKCHNCQTTISTRYPLIELLTAFCSGFVAYHFGFSYFTVALLFFTFILIAATFIDLDTMLLPDQLTLP
LTWAGIALALVEISPVTLQDSVIGAIAGYLCLWSVYWGFKLLTGKEGMGYGDFKLLAALGAWLGWQSLPMIILLSSVVGI
VFGIIQLRLQKQGIEKAFPFGPYLAIAGWISLIWGEQILNWYFTSVLGV

Nucleotide

• Length: 870 bp

>NTDB_id=81541 M2042_RS13545 WP_025768182.1 2830924..2831793(+) (pilD) [Vibrio alginolyticus strain HLBS-07]
ATGGAAGTATTCCAGTACTACCCTTGGCTATTCGTTGTGTTTGCCACCATCTTCGGTCTTATCGTGGGTAGCTTCCTCAA
TGTGGTTATTTATCGACTACCTAAAATCATGGAACTAGAATGGCGACGCGAATGTGCCGAGTCATTTCCTGAATACAAAA
TAGAACCTCCTAAAGAAGTGCTGACCTTGAGCGTCCCACGCTCCTCCTGCCAGAAATGCGCAACACCGATACGTATTCGC
GACAACATTCCTGTGATTAGCTGGCTGCTTTTAAAAGGCAAATGTCACAACTGTCAGACAACCATTAGCACACGCTATCC
ACTGATTGAACTGCTCACTGCATTCTGCTCAGGCTTTGTCGCTTACCACTTTGGTTTTAGTTACTTTACCGTTGCACTAC
TCTTTTTCACTTTTATCTTAATCGCTGCAACATTTATCGATCTCGATACTATGTTGTTACCTGACCAATTAACATTACCA
TTAACTTGGGCTGGCATTGCCTTAGCATTAGTCGAAATAAGTCCTGTTACTCTACAAGATTCTGTCATTGGTGCTATTGC
TGGTTACCTATGTCTCTGGTCCGTTTACTGGGGCTTTAAGCTACTTACTGGTAAAGAAGGAATGGGATATGGTGATTTTA
AACTACTAGCAGCACTAGGGGCTTGGCTGGGCTGGCAGTCACTGCCGATGATCATTCTACTTTCTTCTGTGGTTGGCATC
GTATTTGGCATCATTCAACTACGCTTGCAAAAGCAGGGAATTGAAAAAGCTTTCCCTTTCGGTCCTTACTTAGCAATTGC
TGGTTGGATAAGCTTAATTTGGGGCGAGCAGATTTTAAACTGGTACTTTACTTCAGTTCTAGGAGTGTAA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (17-124)

• Type IV leader peptidase family (Peptidase_A24) (135-244)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio campbellii strain DS40M4	90.657	100	0.907
pilD	Vibrio cholerae strain A1552	72.222	99.654	0.72
pilD	Acinetobacter baumannii D1279779	51.812	95.502	0.495
pilD	Acinetobacter nosocomialis M2	51.282	94.464	0.484
pilD	Neisseria gonorrhoeae MS11	48.188	95.502	0.46