Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   M2042_RS16545 Genome accession   NZ_AP023187
Coordinates   3437203..3438312 (-) Length   369 a.a.
NCBI ID   WP_248525380.1    Uniprot ID   -
Organism   Vibrio alginolyticus strain HLBS-07     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 3432203..3443312
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M2042_RS16515 (HLBS07_31250) hemF 3432663..3433580 (-) 918 WP_047104448.1 oxygen-dependent coproporphyrinogen oxidase -
  M2042_RS16520 (HLBS07_31260) - 3433628..3434185 (-) 558 WP_005379084.1 L-threonylcarbamoyladenylate synthase -
  M2042_RS16525 (HLBS07_31270) purE 3434386..3434871 (+) 486 WP_104979868.1 5-(carboxyamino)imidazole ribonucleotide mutase -
  M2042_RS16530 (HLBS07_31280) - 3434876..3436009 (+) 1134 WP_104979869.1 5-(carboxyamino)imidazole ribonucleotide synthase -
  M2042_RS16535 (HLBS07_31290) - 3436075..3436644 (-) 570 WP_017821580.1 topoisomerase DNA-binding C4 zinc finger domain-containing protein -
  M2042_RS16540 (HLBS07_31300) - 3436721..3437200 (-) 480 WP_005379074.1 DUF494 family protein -
  M2042_RS16545 (HLBS07_31310) dprA 3437203..3438312 (-) 1110 WP_248525380.1 DNA-processing protein DprA Machinery gene
  M2042_RS16550 (HLBS07_31320) - 3438296..3439390 (-) 1095 WP_213880788.1 LysM peptidoglycan-binding domain-containing protein -
  M2042_RS16555 (HLBS07_31330) def 3439529..3440047 (+) 519 WP_005379068.1 peptide deformylase -
  M2042_RS16560 (HLBS07_31340) fmt 3440081..3441028 (+) 948 WP_005379066.1 methionyl-tRNA formyltransferase -
  M2042_RS16565 (HLBS07_31350) rsmB 3441109..3442392 (+) 1284 WP_025628789.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -

Sequence

Protein


Download         Length: 369 a.a.        Molecular weight: 39986.75 Da        Isoelectric Point: 7.0082

>NTDB_id=81557 M2042_RS16545 WP_248525380.1 3437203..3438312(-) (dprA) [Vibrio alginolyticus strain HLBS-07]
MNRRNNDDLDAWLKLSCLPGIGGVKMNKLLARDTPRNIVNFSPEQLQQLGLTTKQIQAWASTDKEVDACLSWLEASTNHH
ILTLTDPRYPPQLKQIVAPPPLLFVQGNPACLSLPQIAMVGSRNASIDGLQHARQFAAEFVQHDFIVTSGLALGIDGHAH
DGALQAGGKTIAVLGSGLANIYPARHRGLAQRVIEHGALVSEFRPNAKPRPENFPRRNRIISGLSLGVLVVEAAKKSGSL
ITARYALEQGREVFALPASINAPNACGGNQLIRHGACLVEKTKDVLDEIQSLLDWSINQSTDLFSTLNDEEELPFPQLLA
NVGSEATPVDILANRTNIPVQEVMMQLLELELSGHVVAVSGGYIRKGRG

Nucleotide


Download         Length: 1110 bp        

>NTDB_id=81557 M2042_RS16545 WP_248525380.1 3437203..3438312(-) (dprA) [Vibrio alginolyticus strain HLBS-07]
ATGAATCGACGAAATAACGATGATCTCGATGCCTGGTTAAAACTGAGTTGTTTACCAGGCATTGGCGGCGTCAAAATGAA
TAAGCTACTGGCAAGAGACACGCCACGTAACATCGTAAACTTCTCTCCTGAACAGCTACAACAACTTGGGTTAACAACTA
AGCAAATTCAAGCTTGGGCTTCAACAGATAAAGAAGTCGATGCTTGTTTAAGTTGGCTTGAGGCTTCTACAAATCATCAT
ATCCTGACACTGACTGACCCGCGTTATCCACCTCAACTCAAACAAATCGTTGCGCCGCCACCTCTACTTTTTGTTCAAGG
AAACCCTGCTTGTCTTTCTCTGCCACAAATCGCGATGGTTGGCAGCCGAAATGCGAGTATTGATGGATTACAGCATGCAC
GTCAGTTCGCTGCAGAGTTTGTTCAGCACGATTTTATTGTCACCAGTGGTCTCGCTTTAGGCATTGATGGTCATGCGCAT
GATGGTGCGTTGCAAGCGGGTGGTAAGACGATTGCGGTGCTAGGATCTGGCTTAGCAAATATTTATCCGGCACGTCATCG
TGGTTTAGCGCAACGTGTTATTGAACATGGGGCTTTGGTGTCTGAGTTTCGGCCTAATGCCAAGCCGCGCCCAGAAAACT
TCCCGCGTCGTAATCGTATTATTAGTGGATTATCGCTTGGTGTACTGGTCGTCGAGGCGGCGAAAAAGAGCGGCTCGTTA
ATTACAGCTCGTTACGCGCTTGAGCAAGGTCGAGAAGTATTTGCGCTGCCAGCGTCAATCAATGCCCCCAATGCCTGCGG
TGGAAACCAGTTGATACGTCATGGCGCTTGCCTAGTAGAAAAGACGAAAGATGTCTTAGATGAAATACAGTCCTTGCTTG
ATTGGTCTATTAATCAGAGTACCGATTTATTTTCTACGTTAAATGATGAAGAAGAATTGCCATTTCCTCAGCTGTTAGCT
AACGTAGGAAGTGAAGCTACACCGGTTGATATTCTTGCAAACAGGACCAATATACCTGTCCAAGAAGTCATGATGCAGCT
CTTAGAGTTAGAACTCTCTGGGCATGTCGTTGCGGTTTCAGGTGGCTATATTCGAAAGGGGAGGGGCTAG

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(77-280)

DprA winged helix domain (DprA_WH)

(317-362)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Vibrio campbellii strain DS40M4

82.656

100

0.827
  dprA Vibrio cholerae strain A1552

57.027

100

0.572
  dprA Glaesserella parasuis strain SC1401

46.774

100

0.472
  dprA Legionella pneumophila strain ERS1305867

44.598

97.832

0.436
  dprA Haemophilus influenzae Rd KW20

44.38

94.038

0.417
  dprA Neisseria meningitidis strain C311

37.121

100

0.398
  dprA Neisseria meningitidis MC58

37.121

100

0.398
  dprA Neisseria gonorrhoeae MS11

35.787

100

0.382
  dprA Neisseria gonorrhoeae strain FA1090

35.533

100

0.379

Multiple sequence alignment