Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   YZOS03_RS15495 Genome accession   NZ_AP023185
Coordinates   3253116..3254225 (-) Length   369 a.a.
NCBI ID   WP_005386649.1    Uniprot ID   -
Organism   Vibrio alginolyticus strain YZOS-03     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 3248116..3259225
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  YZOS03_RS15465 (YZOS03_29270) hemF 3248576..3249493 (-) 918 WP_248475640.1 oxygen-dependent coproporphyrinogen oxidase -
  YZOS03_RS15470 (YZOS03_29280) - 3249541..3250098 (-) 558 WP_005379084.1 L-threonylcarbamoyladenylate synthase -
  YZOS03_RS15475 (YZOS03_29290) purE 3250299..3250784 (+) 486 WP_005379082.1 5-(carboxyamino)imidazole ribonucleotide mutase -
  YZOS03_RS15480 (YZOS03_29300) - 3250789..3251922 (+) 1134 WP_064368876.1 5-(carboxyamino)imidazole ribonucleotide synthase -
  YZOS03_RS15485 (YZOS03_29310) - 3251986..3252555 (-) 570 WP_005386647.1 topoisomerase DNA-binding C4 zinc finger domain-containing protein -
  YZOS03_RS15490 (YZOS03_29320) - 3252634..3253113 (-) 480 WP_005379074.1 DUF494 family protein -
  YZOS03_RS15495 (YZOS03_29330) dprA 3253116..3254225 (-) 1110 WP_005386649.1 DNA-processing protein DprA Machinery gene
  YZOS03_RS15500 (YZOS03_29340) - 3254209..3255303 (-) 1095 WP_017821578.1 LysM peptidoglycan-binding domain-containing protein -
  YZOS03_RS15505 (YZOS03_29350) def 3255442..3255960 (+) 519 WP_064368875.1 peptide deformylase -
  YZOS03_RS15510 (YZOS03_29360) fmt 3255994..3256941 (+) 948 WP_248475641.1 methionyl-tRNA formyltransferase -
  YZOS03_RS15515 (YZOS03_29370) rsmB 3257022..3258305 (+) 1284 WP_005386654.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -

Sequence

Protein


Download         Length: 369 a.a.        Molecular weight: 39909.68 Da        Isoelectric Point: 7.0019

>NTDB_id=81514 YZOS03_RS15495 WP_005386649.1 3253116..3254225(-) (dprA) [Vibrio alginolyticus strain YZOS-03]
MNRRNNDDLAAWLKLSCLPGIGGVKMNKLLARDTPCNIVNFSPEQLQQLGLTTKQIQAWASTDKEVDACLSWLEASTNHH
ILTLTDPRYPPQLKQIVAPPPLLFVQGNSTCLSLPQIAMVGSRNASIDGLQHARQFAAEFVQHDFIVTSGLALGIDGHAH
DGALQAGGKTIAVLGSGLANIYPARHRGLAQRVIEHGALVSEFRPNAKPRPENFPRRNRIISGLSLGVLVVEAAKKSGSL
ITARYALEQGREVFALPASINAPNACGGNQLIRHGACLVEKTKDVLDEIQSLLDWSINQSTDLFSTLNDEEELPFPQLLA
NVGSEATPVDILANRTNIPVQEVMMQLLELELSGHVVAVSGGYIRKGRG

Nucleotide


Download         Length: 1110 bp        

>NTDB_id=81514 YZOS03_RS15495 WP_005386649.1 3253116..3254225(-) (dprA) [Vibrio alginolyticus strain YZOS-03]
ATGAATCGACGAAATAACGATGATCTCGCTGCCTGGTTAAAACTGAGTTGTTTACCAGGCATTGGCGGCGTCAAAATGAA
TAAGCTACTGGCAAGAGACACGCCATGTAACATCGTAAACTTCTCTCCTGAACAGCTACAACAACTTGGGTTAACAACTA
AGCAAATTCAAGCTTGGGCTTCAACAGATAAAGAAGTCGATGCTTGTTTAAGCTGGCTTGAGGCTTCTACAAACCATCAT
ATCCTGACACTGACTGACCCGCGTTATCCACCTCAACTCAAACAAATCGTTGCACCGCCACCTCTACTTTTTGTTCAAGG
AAACTCTACTTGTCTTTCTCTGCCACAAATCGCGATGGTTGGCAGCCGAAATGCGAGTATTGATGGATTACAGCATGCAC
GTCAGTTCGCTGCAGAGTTTGTTCAGCACGATTTTATTGTCACCAGTGGTCTCGCTTTAGGCATTGATGGCCATGCGCAT
GATGGTGCGTTGCAAGCGGGTGGTAAGACGATTGCGGTGCTAGGATCTGGCTTAGCAAATATTTATCCGGCACGTCATCG
TGGTTTAGCGCAACGTGTTATTGAACATGGGGCTTTGGTGTCTGAGTTTCGGCCTAATGCCAAGCCGCGCCCAGAAAACT
TCCCGCGTCGTAATCGTATTATTAGTGGATTATCGCTTGGTGTACTGGTCGTCGAGGCGGCGAAAAAGAGCGGCTCGCTA
ATTACAGCTCGTTACGCGCTTGAGCAAGGTCGAGAAGTATTTGCGCTGCCAGCGTCAATCAATGCCCCCAATGCCTGCGG
TGGAAACCAGTTGATACGTCATGGCGCTTGCCTCGTAGAAAAGACGAAAGATGTCTTAGATGAAATACAGTCCTTGCTTG
ATTGGTCTATTAATCAGAGTACCGATTTATTTTCTACGTTAAATGATGAAGAAGAATTGCCATTTCCTCAGCTGTTAGCT
AACGTAGGAAGTGAAGCTACACCGGTTGATATTCTTGCAAACAGGACCAATATACCTGTCCAAGAAGTCATGATGCAGCT
CTTAGAGTTAGAACTCTCTGGGCATGTCGTTGCGGTTTCAGGTGGCTATATTCGAAAGGGGAGGGGCTAG

Domains

Predicted by InterproScan.

DprA winged helix domain (DprA_WH)

(317-362)

DNA recombination-mediator protein A (DNA_processg_A)

(77-280)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Vibrio campbellii strain DS40M4

82.927

100

0.829
  dprA Vibrio cholerae strain A1552

57.297

100

0.575
  dprA Glaesserella parasuis strain SC1401

46.774

100

0.472
  dprA Legionella pneumophila strain ERS1305867

44.598

97.832

0.436
  dprA Haemophilus influenzae Rd KW20

44.669

94.038

0.42
  dprA Neisseria meningitidis strain C311

37.374

100

0.401
  dprA Neisseria meningitidis MC58

37.374

100

0.401
  dprA Neisseria gonorrhoeae MS11

35.787

100

0.382
  dprA Neisseria gonorrhoeae strain FA1090

35.533

100

0.379
  dprA Acinetobacter baylyi ADP1

38.162

97.29

0.371

Multiple sequence alignment