Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   RYH83_RS26670 Genome accession   NZ_CP136539
Coordinates   5669634..5670851 (+) Length   405 a.a.
NCBI ID   WP_003161441.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain GOM9     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5664634..5675851
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RYH83_RS26650 (RYH83_26650) nadC 5666225..5667073 (+) 849 WP_003116246.1 carboxylating nicotinate-nucleotide diphosphorylase -
  RYH83_RS26660 (RYH83_26660) pilE 5667226..5667699 (-) 474 WP_015503553.1 pilin Machinery gene
  RYH83_RS26665 (RYH83_26665) pilB 5667930..5669630 (+) 1701 WP_003120945.1 type IV-A pilus assembly ATPase PilB Machinery gene
  RYH83_RS26670 (RYH83_26670) pilC 5669634..5670851 (+) 1218 WP_003161441.1 type II secretion system F family protein Machinery gene
  RYH83_RS26675 (RYH83_26675) pilD 5670854..5671726 (+) 873 WP_003116251.1 type IV prepilin peptidase/methyltransferase PilD Machinery gene
  RYH83_RS26680 (RYH83_26680) coaE 5671723..5672334 (+) 612 WP_003112838.1 dephospho-CoA kinase -
  RYH83_RS26685 (RYH83_26685) yacG 5672331..5672531 (+) 201 WP_003094656.1 DNA gyrase inhibitor YacG -
  RYH83_RS26690 (RYH83_26690) - 5672568..5672777 (-) 210 WP_003120946.1 hypothetical protein -
  RYH83_RS26695 (RYH83_26695) - 5672883..5673572 (-) 690 WP_003103868.1 energy-coupling factor ABC transporter permease -
  RYH83_RS26700 (RYH83_26700) - 5673569..5674039 (-) 471 WP_003125205.1 hypothetical protein -
  RYH83_RS26705 (RYH83_26705) - 5674036..5674461 (-) 426 WP_003103865.1 GNAT family N-acetyltransferase -
  RYH83_RS26710 (RYH83_26710) - 5674594..5675223 (+) 630 WP_003120948.1 DUF1780 domain-containing protein -
  RYH83_RS26715 (RYH83_26715) - 5675220..5675669 (+) 450 WP_003161439.1 MOSC domain-containing protein -

Sequence

Protein


Download         Length: 405 a.a.        Molecular weight: 44272.21 Da        Isoelectric Point: 9.8988

>NTDB_id=814969 RYH83_RS26670 WP_003161441.1 5669634..5670851(+) (pilC) [Pseudomonas aeruginosa strain GOM9]
MADKALKTCVFVWEGTDKKGAKVKGELAGQNTMLVKAQLRKQGINPLKVRKKGITLLGKGKRVKPMDIALFTRQMATMMG
AGVPLLQSFDIISEGFDNPNMRKLVDEIKQEVSAGNSLANSLRKKPLYFDDLYCNLVDAGEQSGALETLLDRVATYKEKT
ESLKAKIKKAMTYPIAVVLVAIIVSAILLIKVVPQFQSVFSSFGAELPAFTMMVINLSNLLQEWWLVVLIGLFSASFTIK
ESHKRSVNFRNTVDRYMLKIPIIGGILYKSAVARYARTLSTTFAAGVPLVEALDSVSGATGNVVFRNAVSKIKQDVSTGM
QLNFSMRTTNVFPNMAIQMTAIGEESGSLDDMLGKVAAFYEEEVDNAVDNLTTLMEPMIMAVLGVLVGGLIIAMYLPIFQ
LGSVV

Nucleotide


Download         Length: 1218 bp        

>NTDB_id=814969 RYH83_RS26670 WP_003161441.1 5669634..5670851(+) (pilC) [Pseudomonas aeruginosa strain GOM9]
ATGGCGGATAAAGCGTTAAAAACCTGTGTTTTCGTCTGGGAAGGCACGGACAAGAAAGGGGCAAAGGTCAAGGGGGAGTT
GGCTGGCCAGAACACTATGCTGGTGAAGGCGCAACTGCGCAAACAGGGCATAAATCCGCTCAAGGTCAGAAAAAAGGGCA
TTACCCTTCTCGGCAAGGGAAAGCGCGTAAAGCCGATGGACATCGCACTATTTACTCGTCAGATGGCAACCATGATGGGT
GCTGGGGTTCCTCTCTTGCAATCGTTCGACATAATTTCCGAAGGTTTCGACAATCCCAACATGCGTAAGCTGGTCGACGA
GATCAAACAAGAGGTCTCGGCGGGTAACAGCCTGGCAAACTCCTTGCGAAAGAAACCTCTTTATTTTGACGATCTCTATT
GCAACCTGGTGGATGCAGGTGAACAATCTGGCGCCTTGGAGACTTTGCTTGACCGTGTTGCCACCTATAAGGAAAAAACC
GAATCGCTAAAAGCCAAGATAAAAAAGGCTATGACATACCCCATTGCCGTCGTCTTGGTCGCGATCATTGTTTCAGCCAT
TCTCCTGATCAAGGTCGTACCCCAGTTCCAATCCGTTTTCTCCAGTTTCGGAGCGGAACTACCAGCCTTTACAATGATGG
TGATAAACCTGTCAAATCTTTTACAGGAATGGTGGCTAGTCGTCCTCATCGGATTATTCAGCGCCAGCTTCACCATCAAG
GAATCGCATAAGCGTTCAGTAAATTTCCGTAACACGGTAGACCGCTATATGTTGAAAATACCGATAATCGGAGGAATACT
TTACAAATCAGCCGTGGCACGTTACGCCCGTACACTTTCAACAACTTTCGCCGCAGGTGTTCCATTGGTGGAGGCACTAG
ACTCTGTCTCTGGAGCGACAGGAAACGTGGTATTCCGCAACGCGGTAAGCAAGATCAAACAGGATGTATCCACAGGTATG
CAATTGAACTTCTCCATGAGAACGACCAATGTATTCCCCAACATGGCAATCCAGATGACAGCCATCGGTGAGGAATCCGG
TTCTCTGGACGACATGTTGGGCAAGGTGGCTGCGTTCTATGAGGAGGAAGTAGACAATGCCGTCGACAATCTGACAACTC
TCATGGAACCTATGATCATGGCCGTGCTCGGCGTACTGGTCGGCGGCCTGATCATCGCTATGTATCTACCGATCTTCCAA
CTGGGTTCCGTTGTGTAA

Domains

Predicted by InterProScan.

Type II secretion system (T2SS), protein F (T2SSF)

(276-397)

Type II secretion system (T2SS), protein F (T2SSF)

(71-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

78.519

100

0.785
  pilC Acinetobacter baumannii D1279779

58.663

99.753

0.585
  pilC Acinetobacter baylyi ADP1

59.045

98.272

0.58
  pilC Legionella pneumophila strain ERS1305867

54.293

97.778

0.531
  pilG Neisseria meningitidis 44/76-A

44.03

99.259

0.437
  pilG Neisseria gonorrhoeae MS11

43.781

99.259

0.435
  pilC Vibrio cholerae strain A1552

43.21

100

0.432
  pilC Vibrio campbellii strain DS40M4

43.182

97.778

0.422
  pilC Thermus thermophilus HB27

37.157

99.012

0.368