Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   QBO96_RS13000 Genome accession   NZ_CP122283
Coordinates   2482446..2483396 (-) Length   316 a.a.
NCBI ID   WP_048394199.1    Uniprot ID   A0A2X0XHC4
Organism   Lysinibacillus capsici strain TSBLM     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2477446..2488396
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QBO96_RS12975 (QBO96_12975) - 2478141..2478686 (+) 546 WP_103118905.1 hypothetical protein -
  QBO96_RS12980 (QBO96_12980) - 2479339..2479653 (-) 315 WP_048394205.1 antibiotic biosynthesis monooxygenase -
  QBO96_RS12985 (QBO96_12985) - 2479655..2480680 (-) 1026 WP_054549615.1 siderophore ABC transporter substrate-binding protein -
  QBO96_RS12990 (QBO96_12990) - 2480742..2481503 (-) 762 WP_048394201.1 ABC transporter ATP-binding protein -
  QBO96_RS12995 (QBO96_12995) - 2481500..2482453 (-) 954 WP_004231949.1 iron chelate uptake ABC transporter family permease subunit -
  QBO96_RS13000 (QBO96_13000) ceuB 2482446..2483396 (-) 951 WP_048394199.1 ABC transporter permease Machinery gene
  QBO96_RS13005 (QBO96_13005) - 2483681..2484733 (-) 1053 WP_054549616.1 hypothetical protein -
  QBO96_RS13010 (QBO96_13010) menC 2484784..2485890 (-) 1107 WP_279493296.1 o-succinylbenzoate synthase -
  QBO96_RS13015 (QBO96_13015) - 2485912..2486736 (-) 825 WP_279493298.1 GNAT family N-acetyltransferase -
  QBO96_RS13020 (QBO96_13020) - 2486736..2487881 (-) 1146 WP_048394190.1 M20 peptidase aminoacylase family protein -

Sequence

Protein


Download         Length: 316 a.a.        Molecular weight: 34810.02 Da        Isoelectric Point: 10.1980

>NTDB_id=814967 QBO96_RS13000 WP_048394199.1 2482446..2483396(-) (ceuB) [Lysinibacillus capsici strain TSBLM]
MKIRYLLTATVLLSIVSLFIGVVDIKPSDLLDFQSEEARLFLISRVPRLVAILLAGAGMSIAGLIMQSLSRNKFVSPTTA
GTLDATRLGVLISMMFFTNVTYFQKISFAFIFALAGTLLFMQILNRIKFKDAIFIPLIGLMFGNILSSVTTFFAYKANII
QNISAWLQGDFSLIMKGRYELLYVSVPILILAYIYANRFTVAGMGEDFAKNLGLSYKFVVNLGLVLVALISTTVVLTVGI
IPFLGLIIPNIISLFKGDNLAKTLPHTALLGMSFLLFCDILGRVLIFPYEIPISMTVGVIGSAIFLFMLFRGRAYA

Nucleotide


Download         Length: 951 bp        

>NTDB_id=814967 QBO96_RS13000 WP_048394199.1 2482446..2483396(-) (ceuB) [Lysinibacillus capsici strain TSBLM]
ATGAAAATAAGATATCTTTTAACAGCAACTGTTTTGCTGTCTATTGTGTCGCTCTTTATCGGAGTAGTAGATATTAAGCC
TAGCGACCTATTAGACTTCCAATCAGAAGAAGCTAGACTATTTTTAATTAGTCGTGTACCTAGACTTGTTGCAATCTTGC
TAGCGGGTGCAGGTATGAGTATTGCTGGTTTAATTATGCAAAGCTTAAGTAGGAATAAATTCGTTTCACCAACAACAGCT
GGTACATTAGATGCCACACGGTTGGGTGTATTGATTTCCATGATGTTCTTTACGAACGTTACGTATTTCCAAAAAATTTC
CTTCGCTTTCATATTTGCTTTAGCCGGCACATTACTATTTATGCAAATATTAAACCGAATTAAGTTTAAAGATGCGATTT
TTATACCGCTTATTGGCTTAATGTTTGGGAATATTTTGTCCTCTGTTACAACATTCTTTGCATATAAGGCGAATATTATC
CAAAACATTTCTGCATGGTTACAAGGAGATTTCTCATTAATCATGAAAGGCCGTTACGAACTGTTATACGTAAGTGTACC
AATACTCATTTTAGCTTACATTTACGCAAATCGTTTTACAGTAGCTGGGATGGGAGAGGATTTTGCAAAAAATCTTGGTC
TATCCTATAAATTTGTAGTCAATTTAGGCTTGGTGTTGGTAGCTCTTATCTCCACAACAGTGGTGTTAACAGTCGGTATC
ATTCCATTTCTTGGTTTGATTATTCCGAACATTATTTCCCTGTTTAAAGGTGATAATTTGGCAAAAACCTTGCCGCACAC
AGCATTACTTGGTATGTCATTCTTGTTATTCTGTGATATTTTAGGACGAGTACTGATTTTCCCTTATGAAATACCAATAA
GTATGACTGTTGGTGTAATTGGAAGTGCCATCTTCCTATTCATGTTGTTTAGGGGGAGAGCATATGCGTAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(10-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2X0XHC4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

52.848

100

0.528