Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   QBS18_RS01140 Genome accession   NZ_CP121856
Coordinates   221566..222807 (-) Length   413 a.a.
NCBI ID   WP_005336136.1    Uniprot ID   A0A0T6QCE0
Organism   Aeromonas veronii strain LOID 16013     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 216566..227807
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QBS18_RS01115 mutT 218558..218962 (+) 405 WP_042053534.1 8-oxo-dGTP diphosphatase MutT -
  QBS18_RS01120 yacG 219040..219234 (-) 195 WP_120416066.1 DNA gyrase inhibitor YacG -
  QBS18_RS01125 zapD 219244..219966 (-) 723 WP_005336141.1 cell division protein ZapD -
  QBS18_RS01130 coaE 220004..220618 (-) 615 WP_201947199.1 dephospho-CoA kinase -
  QBS18_RS01135 pilD 220632..221504 (-) 873 WP_274160613.1 A24 family peptidase Machinery gene
  QBS18_RS01140 pilC 221566..222807 (-) 1242 WP_005336136.1 type II secretion system F family protein Machinery gene
  QBS18_RS01145 pilB 223048..224754 (-) 1707 WP_139411606.1 PilB family type IVa pilus assembly ATPase TapB Machinery gene
  QBS18_RS01150 - 224758..225192 (-) 435 WP_274160612.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  QBS18_RS01155 nadC 225508..226371 (-) 864 WP_268011569.1 carboxylating nicotinate-nucleotide diphosphorylase -
  QBS18_RS01160 - 226375..226845 (-) 471 WP_274160611.1 retropepsin-like aspartic protease -
  QBS18_RS01165 ampD 226976..227551 (+) 576 WP_069554218.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -

Sequence

Protein


Download         Length: 413 a.a.        Molecular weight: 45427.55 Da        Isoelectric Point: 9.7221

>NTDB_id=814815 QBS18_RS01140 WP_005336136.1 221566..222807(-) (pilC) [Aeromonas veronii strain LOID 16013]
MATLTKKNNAPKKVFAFRWHGVNRKGQKVSGELQADSINTVKTELRKQGVNVTKVAKKSQGLFSKGGAKIKPMDIAIVSR
QITTMLSAGVPLVQSLQIIARSHEKASMRELMGQIAADVETGTPMSEALRRHPLYFDDLYCDLVEAGEQSGALETIYDRI
ATYREKSEALKSKIKKAMFYPTMVILVAIVVTSILLLFVIPQFEDIFKSFGAELPVFTQFVIGISRFMQNWWYVFFGGTA
LGIFLYVRAWRASQKVKDNTDKFVLTIPVVGMILHKAAMARFARTLSTTFSAGIPLVDALISAAGASGNYVYRTAVMAIR
NEVVAGMQINVAMRTVDLFPDMVIQMVMIGEESGAIDDMLSKVATIFEQEVDDLVDGLTSLLEPLIMVVLGVLVGGMVIA
MYLPIFKLGDVVG

Nucleotide


Download         Length: 1242 bp        

>NTDB_id=814815 QBS18_RS01140 WP_005336136.1 221566..222807(-) (pilC) [Aeromonas veronii strain LOID 16013]
ATGGCAACCCTAACGAAAAAGAACAATGCCCCCAAGAAAGTCTTCGCCTTCCGCTGGCACGGGGTAAACCGCAAGGGGCA
GAAGGTCTCCGGCGAGCTGCAGGCCGACAGCATCAACACCGTCAAGACCGAACTGCGCAAGCAGGGGGTCAACGTCACCA
AGGTAGCCAAGAAATCCCAGGGACTCTTCTCCAAGGGCGGCGCCAAGATCAAGCCGATGGATATCGCCATCGTCTCACGC
CAGATCACCACCATGCTCTCCGCCGGCGTACCACTGGTGCAGAGTCTGCAGATCATCGCCCGCAGTCACGAGAAAGCCTC
GATGCGCGAGCTGATGGGGCAGATTGCCGCCGATGTGGAGACCGGTACCCCCATGTCGGAGGCGCTGCGCCGCCATCCTC
TCTATTTCGATGATCTCTATTGCGATCTGGTGGAAGCCGGTGAGCAATCCGGTGCACTGGAGACCATCTACGACCGTATT
GCCACTTACCGGGAAAAGTCGGAAGCGCTCAAGTCGAAGATCAAGAAGGCGATGTTCTACCCCACCATGGTCATTCTGGT
CGCCATCGTGGTCACCTCCATCCTGCTGCTGTTCGTCATTCCGCAGTTCGAGGATATCTTCAAGAGCTTTGGTGCCGAGC
TGCCGGTGTTCACCCAGTTTGTTATCGGCATCTCCCGCTTTATGCAGAACTGGTGGTATGTCTTCTTTGGTGGCACGGCC
CTTGGCATCTTCCTTTACGTGCGGGCCTGGCGGGCCTCCCAGAAGGTAAAAGACAACACCGACAAGTTCGTCCTCACCAT
TCCGGTAGTCGGGATGATCCTGCACAAGGCGGCGATGGCCCGCTTTGCCCGCACCCTGTCTACCACCTTCTCCGCCGGTA
TTCCGCTGGTGGATGCGCTGATTTCGGCGGCTGGGGCCTCGGGCAACTATGTCTATCGCACCGCGGTCATGGCCATCCGC
AACGAGGTGGTGGCCGGTATGCAGATCAACGTTGCAATGCGCACCGTCGATCTCTTCCCCGACATGGTGATCCAGATGGT
GATGATCGGTGAGGAGTCCGGTGCCATCGATGATATGCTCTCCAAGGTCGCCACCATCTTCGAACAGGAGGTGGATGATC
TGGTCGATGGCCTCACCAGCCTGCTGGAACCCCTCATCATGGTGGTGCTCGGGGTGCTGGTCGGCGGTATGGTTATTGCC
ATGTACCTGCCCATCTTCAAGCTTGGCGACGTGGTAGGCTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(282-404)

Type II secretion system (T2SS), protein F (T2SSF)

(79-201)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0T6QCE0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

57.323

95.884

0.55
  pilC Acinetobacter baumannii D1279779

53.75

96.852

0.521
  pilC Acinetobacter baylyi ADP1

52.393

96.126

0.504
  pilC Legionella pneumophila strain ERS1305867

50.985

98.305

0.501
  pilC Vibrio cholerae strain A1552

46.883

97.094

0.455
  pilC Vibrio campbellii strain DS40M4

45.792

97.821

0.448
  pilG Neisseria gonorrhoeae MS11

40.247

98.063

0.395
  pilG Neisseria meningitidis 44/76-A

40

98.063

0.392
  pilC Thermus thermophilus HB27

38

96.852

0.368