Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA/comE1   Type   Machinery gene
Locus tag   QBS27_RS16015 Genome accession   NZ_CP121840
Coordinates   3500653..3500973 (+) Length   106 a.a.
NCBI ID   WP_279489713.1    Uniprot ID   -
Organism   Aeromonas veronii strain ANYA 18197     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3495653..3505973
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QBS27_RS16000 yfbV 3496091..3496531 (-) 441 WP_005339116.1 terminus macrodomain insulation protein YfbV -
  QBS27_RS16005 - 3496836..3498038 (+) 1203 WP_005349210.1 acetate kinase -
  QBS27_RS16010 pta 3498094..3500274 (+) 2181 WP_279489712.1 phosphate acetyltransferase -
  QBS27_RS16015 comEA/comE1 3500653..3500973 (+) 321 WP_279489713.1 ComEA family DNA-binding protein Machinery gene
  QBS27_RS16020 galU 3501069..3501980 (+) 912 WP_111900684.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  QBS27_RS16025 - 3502194..3503591 (+) 1398 WP_040065012.1 peptide MFS transporter -
  QBS27_RS16030 - 3503666..3504637 (-) 972 WP_204484104.1 response regulator -
  QBS27_RS16035 - 3504878..3505576 (+) 699 WP_139405566.1 DnaT-like ssDNA-binding domain-containing protein -

Sequence

Protein


Download         Length: 106 a.a.        Molecular weight: 11344.35 Da        Isoelectric Point: 9.6564

>NTDB_id=814557 QBS27_RS16015 WP_279489713.1 3500653..3500973(+) (comEA/comE1) [Aeromonas veronii strain ANYA 18197]
MLMKKLSAIMLLACLPLFSQPVLAADKAAPKQTTTTEVAKETGKLNINTATLAELTSLKGIGDKKAQAIIDYREKQGKFT
SVDQLADVNGIGPATLEANRDMIIVK

Nucleotide


Download         Length: 321 bp        

>NTDB_id=814557 QBS27_RS16015 WP_279489713.1 3500653..3500973(+) (comEA/comE1) [Aeromonas veronii strain ANYA 18197]
ATGCTGATGAAGAAGCTCTCTGCAATCATGCTGCTGGCCTGCTTGCCACTGTTCAGCCAACCTGTGCTGGCCGCAGATAA
GGCAGCCCCCAAGCAAACAACCACGACCGAGGTCGCCAAGGAGACCGGCAAGCTGAACATCAATACCGCCACCCTTGCCG
AACTCACCAGCCTGAAAGGGATTGGCGACAAGAAGGCACAAGCCATCATCGACTATCGGGAAAAACAGGGAAAGTTCACC
TCGGTCGATCAGCTGGCGGATGTCAATGGCATTGGCCCGGCCACGCTGGAAGCCAACAGGGACATGATAATAGTCAAATA
A

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(43-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA/comE1 Glaesserella parasuis strain SC1401

45.133

100

0.481
  comEA Vibrio cholerae C6706

45.631

97.17

0.443
  comEA Vibrio cholerae strain A1552

45.631

97.17

0.443
  comEA Vibrio parahaemolyticus RIMD 2210633

44.33

91.509

0.406
  comEA Legionella pneumophila strain ERS1305867

41.414

93.396

0.387
  comEA Legionella pneumophila str. Paris

41.414

93.396

0.387
  comE1/comEA Haemophilus influenzae Rd KW20

64.516

58.491

0.377
  comEA/celA/cilE Streptococcus pneumoniae D39

46.429

79.245

0.368
  comEA/celA/cilE Streptococcus pneumoniae R6

46.429

79.245

0.368
  comEA/celA/cilE Streptococcus pneumoniae TIGR4

46.429

79.245

0.368
  comEA/celA/cilE Streptococcus pneumoniae Rx1

46.429

79.245

0.368