Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   QBE03_RS07080 Genome accession   NZ_CP121698
Coordinates   1607084..1608340 (-) Length   418 a.a.
NCBI ID   WP_267096242.1    Uniprot ID   -
Organism   Xanthomonas sacchari strain DJ16     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1602084..1613340
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QBE03_RS07055 - 1603090..1603272 (+) 183 WP_152243260.1 hypothetical protein -
  QBE03_RS07060 - 1603456..1604133 (+) 678 WP_010340533.1 response regulator transcription factor -
  QBE03_RS07065 - 1604126..1605460 (+) 1335 WP_048490330.1 HAMP domain-containing sensor histidine kinase -
  QBE03_RS07070 coaE 1605571..1606200 (-) 630 WP_279363091.1 dephospho-CoA kinase -
  QBE03_RS07075 - 1606214..1607077 (-) 864 WP_017910397.1 A24 family peptidase -
  QBE03_RS07080 pilC 1607084..1608340 (-) 1257 WP_267096242.1 type II secretion system F family protein Machinery gene
  QBE03_RS07085 - 1608723..1609163 (+) 441 WP_267096241.1 pilin -
  QBE03_RS07090 pilB 1609342..1611075 (+) 1734 WP_267096240.1 type IV-A pilus assembly ATPase PilB Machinery gene
  QBE03_RS07095 pilR 1611241..1612629 (-) 1389 WP_279363097.1 sigma-54 dependent transcriptional regulator Regulator

Sequence

Protein


Download         Length: 418 a.a.        Molecular weight: 45555.77 Da        Isoelectric Point: 10.1183

>NTDB_id=813998 QBE03_RS07080 WP_267096242.1 1607084..1608340(-) (pilC) [Xanthomonas sacchari strain DJ16]
MSATRSAVSKEPAARSTSQQVSFVWEGTDKRGIKMKGEQIAKNANLLRAELRRQGITPSLVKPKPKPLFGSAGSKIGPKD
VAFFSRQMATMMKSGVPIVSSLEIIASGHKNPRMKKMVDQIRTDIEGGSSLYEAISKHPVQFDELYRNLVKAGEGAGVLE
TVLETVATYKENIEALKGKIKKALFYPAMVMAVALIVSSILLVWVVPQFEDVFKSFGAELPAFTQMIVAASRFMVAYWLV
LLIALVGTIGGFIFAYKRSPSMQHGMDRLILKVPIIGQIMHNSSVARFSRTLAVTFRAGVPLVEALDIVAGATGNSVYEK
SVLRMRDDVAVGYPVNIAMKQTNLFPHMVIQMTAIGEEAGALDAMLFKVAEYFEQEVNNAVDALSSLLEPLIMVFIGTIV
GGMVIGMYLPIFKLASVV

Nucleotide


Download         Length: 1257 bp        

>NTDB_id=813998 QBE03_RS07080 WP_267096242.1 1607084..1608340(-) (pilC) [Xanthomonas sacchari strain DJ16]
ATGTCTGCAACTCGTAGCGCGGTATCAAAAGAGCCAGCAGCTCGTAGTACGAGCCAGCAGGTTTCATTTGTATGGGAAGG
CACGGACAAACGCGGCATCAAGATGAAAGGCGAGCAAATCGCCAAGAATGCCAATTTGCTGCGAGCAGAACTGCGCCGCC
AAGGAATCACTCCCTCTCTTGTCAAGCCAAAGCCGAAGCCTTTGTTCGGCTCCGCGGGCAGCAAGATCGGCCCCAAGGAC
GTCGCATTCTTCAGTCGCCAGATGGCAACGATGATGAAATCGGGCGTACCGATCGTGAGTTCGCTGGAAATCATCGCAAG
CGGCCATAAAAATCCGCGAATGAAGAAAATGGTCGACCAAATTCGTACCGACATCGAGGGCGGCTCGTCGCTTTATGAAG
CGATCAGCAAGCATCCCGTGCAGTTTGACGAGCTATATCGAAACCTTGTAAAGGCGGGCGAAGGCGCAGGTGTACTGGAG
ACCGTCCTGGAGACTGTCGCCACCTACAAGGAAAACATCGAAGCACTGAAAGGCAAGATAAAGAAGGCATTGTTTTATCC
TGCGATGGTCATGGCAGTTGCCTTGATTGTCAGTTCTATTTTGCTTGTGTGGGTTGTTCCTCAGTTCGAAGACGTGTTCA
AGAGTTTCGGCGCTGAGCTTCCAGCGTTCACCCAAATGATCGTGGCAGCTTCGCGCTTCATGGTGGCTTACTGGCTAGTG
CTCCTGATTGCATTGGTCGGCACCATTGGCGGCTTCATCTTTGCCTATAAACGGTCGCCCTCAATGCAACATGGCATGGA
TCGGTTAATCCTGAAGGTACCGATCATCGGCCAAATCATGCACAACAGCTCGGTAGCGCGCTTCTCGCGCACCCTGGCCG
TAACCTTCCGCGCCGGCGTGCCACTGGTGGAAGCGCTAGACATTGTCGCTGGTGCCACTGGTAACAGCGTCTACGAAAAG
TCGGTGTTGCGAATGCGTGACGATGTCGCGGTTGGCTACCCAGTCAATATCGCGATGAAGCAGACAAATCTGTTCCCGCA
CATGGTGATCCAGATGACGGCGATCGGCGAAGAGGCCGGCGCGCTGGATGCAATGCTGTTCAAGGTGGCCGAGTACTTCG
AGCAGGAAGTGAACAATGCGGTCGATGCATTGAGCAGCTTGCTGGAACCGCTAATCATGGTATTCATCGGCACCATCGTC
GGCGGCATGGTCATCGGTATGTATCTACCCATTTTCAAGCTAGCCTCCGTGGTCTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(288-410)

Type II secretion system (T2SS), protein F (T2SSF)

(84-207)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

53.788

94.737

0.51
  pilC Legionella pneumophila strain ERS1305867

52.513

95.215

0.5
  pilC Acinetobacter baylyi ADP1

51.106

97.368

0.498
  pilC Acinetobacter baumannii D1279779

52.01

95.215

0.495
  pilG Neisseria gonorrhoeae MS11

42.786

96.172

0.411
  pilC Vibrio cholerae strain A1552

43.073

94.976

0.409
  pilG Neisseria meningitidis 44/76-A

42.289

96.172

0.407
  pilC Vibrio campbellii strain DS40M4

40.399

95.933

0.388