Detailed information NTG0814000

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: QBE03_RS07095
• Genome accession: NZ_CP121698
• Coordinates: 1611241..1612629 (-)
• Length: 462 a.a.
• NCBI ID: WP_279363097.1
• Uniprot ID: -
• Organism: Xanthomonas sacchari strain DJ16
• Function: regulate pilin expression (predicted from homology) Competence regulation

Genomic Context

Location: 1606241..1617629

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
QBE03_RS07080	pilC	1607084..1608340 (-)	1257	WP_267096242.1	type II secretion system F family protein	Machinery gene
QBE03_RS07085	-	1608723..1609163 (+)	441	WP_267096241.1	pilin	-
QBE03_RS07090	pilB	1609342..1611075 (+)	1734	WP_267096240.1	type IV-A pilus assembly ATPase PilB	Machinery gene
QBE03_RS07095	pilR	1611241..1612629 (-)	1389	WP_279363097.1	sigma-54 dependent transcriptional regulator	Regulator
QBE03_RS07100	-	1612712..1614325 (-)	1614	WP_267096239.1	ATP-binding protein	-
QBE03_RS07105	sucC	1614716..1615885 (+)	1170	WP_010342227.1	ADP-forming succinate--CoA ligase subunit beta	-
QBE03_RS07110	sucD	1615908..1616783 (+)	876	WP_026144653.1	succinate--CoA ligase subunit alpha	-

Sequence

Protein

• Length: 462 a.a.
• Molecular weight: 49976.46 Da
• Isoelectric Point: 6.8394

>NTDB_id=814000 QBE03_RS07095 WP_279363097.1 1611241..1612629(-) (pilR) [Xanthomonas sacchari strain DJ16]
MNETRSALVVDDERDIRELLVLTLGRMGLRISTAANLAEARELLASNPYDLCITDMRLPDGNGIELVSEIAKHYPRTPVA
MITAFGSMDLAVEALKAGAFDFVSKPVDIQVLRGLVKHALELNNESRAAPPQPAPEQASRLLGASAVMDALRSTIAKVAR
NQAPVYILGESGVGKELVARTIHEQGARAVGPFVPVNCGAIPAELMESEFFGHKKGSFTGAHADQAGLFQAAHGGTLFLD
EVAELPLPMQVKLLRAIQEKSVRPVGAATEVPVDVRILSATHKDLADLVAEGRFRHDLYYRINVIELRVPPLRERGGDLP
QLAAAILARLAKSHGRPTPLLSPSALDALSSYAFPGNVRELENILERALAMAEDDRISATDLRLPQPGNHARSAAEAAPA
LPRGVVDIDPSSSALPSYIEQLERAAIQKALEENRWNKTRTAAQLGITFRALRYKLKKLGME

Nucleotide

• Length: 1389 bp

>NTDB_id=814000 QBE03_RS07095 WP_279363097.1 1611241..1612629(-) (pilR) [Xanthomonas sacchari strain DJ16]
ATGAACGAAACCCGAAGCGCCCTGGTCGTCGACGACGAGCGCGACATCCGCGAGTTGCTGGTCCTGACCCTGGGCCGGAT
GGGGCTGCGCATCAGCACCGCCGCCAACCTCGCCGAAGCGCGCGAACTGCTGGCGAGCAATCCCTACGATCTGTGCATCA
CCGACATGCGCCTGCCCGACGGCAACGGCATCGAGCTGGTCAGCGAGATCGCCAAGCATTACCCGCGCACGCCAGTGGCG
ATGATCACCGCCTTCGGCAGCATGGACCTGGCGGTGGAAGCGCTAAAGGCCGGCGCCTTCGACTTCGTCAGCAAGCCGGT
GGACATCCAGGTGCTGCGCGGCCTGGTCAAGCATGCGCTGGAACTCAACAACGAAAGCCGCGCCGCGCCGCCGCAGCCTG
CTCCGGAGCAGGCCAGCCGCCTGCTCGGCGCCTCGGCGGTGATGGACGCCCTGCGCAGCACCATCGCCAAGGTCGCGCGC
AACCAGGCGCCGGTCTACATCCTCGGCGAATCCGGCGTGGGCAAGGAACTGGTCGCGCGCACCATCCACGAACAGGGCGC
CCGCGCCGTCGGCCCCTTCGTCCCGGTGAACTGCGGCGCGATCCCGGCCGAACTGATGGAAAGCGAGTTCTTCGGCCACA
AGAAGGGCAGCTTCACCGGCGCCCATGCCGACCAGGCCGGCCTGTTCCAGGCTGCGCACGGCGGCACCCTGTTCCTCGAC
GAGGTCGCCGAACTGCCGCTGCCGATGCAGGTCAAGCTGCTGCGCGCGATCCAGGAAAAATCGGTGCGCCCGGTCGGCGC
CGCCACCGAGGTGCCGGTGGACGTGCGCATCCTCTCGGCTACGCACAAGGACCTGGCCGACCTGGTTGCCGAGGGCCGCT
TCCGCCACGACCTGTACTACCGCATCAACGTGATCGAACTGCGCGTGCCGCCGCTGCGCGAGCGCGGCGGCGACCTGCCG
CAACTGGCCGCGGCGATCCTGGCGCGGCTGGCCAAGAGCCACGGCCGCCCCACCCCGCTGCTGTCGCCCTCCGCCCTGGA
CGCCCTGAGCAGCTACGCCTTCCCCGGCAACGTGCGCGAACTGGAAAACATCCTTGAGCGCGCCCTGGCGATGGCCGAGG
ACGACCGGATCAGCGCCACCGACCTGCGCCTGCCGCAACCCGGCAACCACGCCCGCAGCGCCGCCGAAGCCGCCCCGGCC
CTGCCGCGCGGCGTGGTCGACATCGACCCCAGCTCCTCCGCCCTGCCGTCCTACATCGAGCAACTCGAACGCGCCGCGAT
CCAGAAGGCGCTGGAAGAGAACCGCTGGAACAAGACCCGCACCGCGGCACAGTTGGGCATCACCTTTCGGGCGTTGCGCT
ACAAGCTGAAGAAGCTGGGGATGGAGTAG

Domains

Predicted by InterproScan.

• Sigma-54 interaction domain (Sigma54_activat) (142-307)

• Response regulator receiver domain (Response_reg) (8-115)

• Bacterial regulatory protein, Fis family (HTH_8) (419-459)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	62.609	99.567	0.623
pilR	Acinetobacter baumannii strain A118	47.097	100	0.474