Detailed information    

insolico Bioinformatically predicted

Overview

Name   recJ   Type   Machinery gene
Locus tag   F6I35_RS06095 Genome accession   NZ_CP136160
Coordinates   1171495..1173729 (-) Length   744 a.a.
NCBI ID   WP_118138805.1    Uniprot ID   A0A412PQL6
Organism   Streptococcus anginosus strain UMB8616     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1166495..1178729
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F6I35_RS06080 (F6I35_0006080) - 1169479..1169844 (+) 366 WP_003024106.1 GntR family transcriptional regulator -
  F6I35_RS06085 (F6I35_0006085) - 1169848..1170543 (+) 696 WP_024052378.1 ABC transporter ATP-binding protein -
  F6I35_RS06090 (F6I35_0006090) - 1170561..1171358 (+) 798 WP_024052377.1 ABC transporter -
  F6I35_RS06095 (F6I35_0006095) recJ 1171495..1173729 (-) 2235 WP_118138805.1 single-stranded-DNA-specific exonuclease RecJ Machinery gene
  F6I35_RS06100 (F6I35_0006100) - 1173825..1174241 (-) 417 WP_024052375.1 GNAT family N-acetyltransferase -
  F6I35_RS06105 (F6I35_0006105) - 1174219..1174956 (-) 738 WP_101749578.1 class I SAM-dependent methyltransferase -
  F6I35_RS06110 (F6I35_0006110) - 1174966..1175721 (-) 756 WP_150860990.1 SDR family NAD(P)-dependent oxidoreductase -
  F6I35_RS06115 (F6I35_0006115) - 1175731..1176339 (-) 609 WP_024052372.1 histidine phosphatase family protein -
  F6I35_RS06120 (F6I35_0006120) rnz 1176386..1177315 (-) 930 WP_070241726.1 ribonuclease Z -
  F6I35_RS06125 (F6I35_0006125) - 1177326..1177955 (-) 630 WP_024052370.1 hypothetical protein -

Sequence

Protein


Download         Length: 744 a.a.        Molecular weight: 83738.66 Da        Isoelectric Point: 4.4710

>NTDB_id=812871 F6I35_RS06095 WP_118138805.1 1171495..1173729(-) (recJ) [Streptococcus anginosus strain UMB8616]
MITSKYDWQIATNFSDESFIKKAKKLGLEASVANLVYQREIQTEEALRDFLEPSLDQLHDPYELHDMDKAVTRIRQAIEN
YEQILIYGDYDADGMTSASIVKEALEQLGAECQVYLPNRFTDGYGPNASVYKYFIENQGISLIVTVDNGVAGHEAIELAQ
SMGVDVIVTDHHSMPEVLPDAYAIIHPEHPEADYPFKHLAGCGVAFKLATALLEEVQVELLDIVAIGTIADMVSLTDENR
ILVKYGLSVLKNTQRIGLQELFKIAGIQENEVDEETVGFQIAPRLNALGRLDDPNPAIELLTGFDEEEARDIALMINHKN
EERKEIVQKIYDEAKTMVDLNKPVQVLAGEGWNPGVLGIVAGRFLEELHQPVIVLNIENGLAKGSARSIEAVDIFEALDP
HRDLFVAFGGHAGAAGMTLEASKLEALSQVLVAYIEDNQVDLSTKNELFLDEELSLPDLTLETLKNFEKLAPFGMDNKKP
VFYLKDFKIENARTMGAGNTHLKLKISQADAVFEVVAFGLGNLATEFSQTKNLELAVTLSVNKWNGQTSLQLMLVDARVN
GIQLFNIRGKNAPLPENVPVLRFSEEMPNLEKSRAVVVYDLPERLNQLKVIIQQGHFEAIYFKNEIAQPYYLTGFGTRDQ
FAKFYKTIYQFPEFDIRYKLKELAAYLKIDPILLIKMIQIFEELDFVTIQDGVMQVNKKAEKKAIENSHIYQELKKTVKE
QELMALGTVQEIYDYLIEKDEFSN

Nucleotide


Download         Length: 2235 bp        

>NTDB_id=812871 F6I35_RS06095 WP_118138805.1 1171495..1173729(-) (recJ) [Streptococcus anginosus strain UMB8616]
ATGATTACATCAAAATATGATTGGCAGATTGCCACAAATTTTTCAGATGAGAGCTTTATTAAAAAAGCTAAAAAACTTGG
CTTGGAGGCTTCGGTAGCTAATCTGGTCTACCAGAGAGAAATCCAGACAGAAGAAGCACTGCGAGATTTTCTAGAGCCTA
GTTTGGACCAGCTGCATGATCCTTATGAACTGCATGATATGGATAAGGCAGTGACGCGCATTCGTCAAGCGATTGAAAAT
TATGAGCAGATCTTGATTTATGGAGATTATGATGCGGATGGCATGACTTCGGCTTCTATTGTTAAAGAAGCACTAGAACA
ACTTGGAGCAGAGTGTCAGGTCTATTTGCCCAATCGATTTACAGACGGTTATGGTCCTAACGCAAGTGTTTACAAGTATT
TTATTGAAAATCAGGGAATTTCACTCATCGTTACAGTGGATAATGGAGTTGCAGGACATGAAGCAATCGAACTAGCTCAG
TCTATGGGAGTGGATGTCATTGTGACGGATCACCATTCTATGCCAGAGGTACTTCCTGATGCTTATGCAATTATTCACCC
AGAACATCCGGAAGCTGATTATCCTTTTAAGCATTTAGCTGGTTGCGGTGTAGCTTTTAAGTTAGCGACTGCTCTTTTAG
AGGAAGTACAAGTAGAGTTGCTAGATATAGTCGCTATTGGAACTATTGCAGATATGGTCAGCCTAACAGATGAAAATCGC
ATTCTGGTCAAATATGGGCTAAGTGTCCTCAAAAACACTCAACGAATCGGCTTGCAGGAGCTTTTTAAGATTGCAGGTAT
TCAGGAAAATGAAGTGGATGAAGAAACAGTTGGTTTTCAGATAGCTCCCAGACTCAATGCTCTAGGTCGACTTGATGATC
CAAATCCTGCTATTGAACTTCTGACGGGCTTTGATGAGGAAGAAGCGCGTGACATTGCCCTTATGATTAACCATAAAAAT
GAAGAGCGCAAAGAAATTGTTCAGAAGATCTATGATGAAGCCAAGACCATGGTTGATCTCAATAAACCTGTTCAGGTTCT
AGCCGGTGAAGGTTGGAATCCAGGTGTTTTGGGAATTGTGGCAGGGCGGTTTTTGGAAGAATTACACCAGCCGGTCATCG
TCTTGAATATTGAGAATGGATTAGCAAAAGGCAGCGCCCGCAGCATTGAAGCAGTTGATATTTTTGAAGCGTTAGACCCT
CATCGAGATTTATTTGTGGCTTTTGGTGGGCATGCAGGGGCAGCTGGGATGACTCTAGAGGCCAGCAAGTTAGAAGCACT
CAGCCAGGTTTTGGTAGCATATATTGAAGATAATCAAGTGGATTTGTCCACTAAGAATGAGCTCTTTTTGGATGAGGAAT
TATCCTTGCCAGATTTGACACTAGAGACCCTCAAAAACTTTGAAAAGTTAGCTCCTTTTGGCATGGACAATAAAAAGCCT
GTTTTTTATTTGAAAGATTTTAAAATTGAAAATGCCCGCACCATGGGAGCAGGGAATACTCACCTTAAGCTGAAAATTTC
TCAGGCTGACGCAGTTTTTGAGGTCGTAGCTTTTGGTCTAGGTAATCTTGCGACAGAATTTTCCCAAACTAAAAACTTAG
AGCTGGCGGTTACGCTGTCGGTCAATAAATGGAATGGTCAAACTAGTCTCCAGCTTATGCTGGTGGATGCTAGGGTCAAT
GGGATTCAGCTCTTTAATATCCGAGGTAAAAATGCTCCTTTACCTGAAAATGTGCCCGTCCTGCGTTTTTCAGAAGAAAT
GCCTAATTTGGAAAAGAGCAGAGCAGTTGTGGTGTATGACTTGCCTGAACGCCTAAATCAGCTCAAAGTAATCATTCAGC
AAGGACATTTTGAAGCAATTTACTTTAAAAATGAGATTGCTCAGCCCTATTATCTGACAGGTTTCGGAACGAGAGACCAG
TTTGCCAAATTCTATAAAACAATTTATCAATTTCCAGAGTTTGACATTCGTTATAAGCTCAAAGAACTGGCTGCTTATCT
CAAGATTGACCCAATTCTACTCATAAAGATGATTCAGATATTTGAAGAGCTGGACTTTGTGACAATTCAAGATGGAGTGA
TGCAAGTAAACAAAAAAGCAGAAAAAAAAGCTATTGAAAACAGCCATATTTATCAAGAACTGAAGAAAACAGTCAAGGAG
CAGGAGCTTATGGCTCTAGGAACTGTGCAGGAAATTTATGATTATCTGATAGAAAAAGATGAATTTTCAAACTAA

Domains

Predicted by InterProScan.

DHHA1 domain (DHHA1)

(317-434)

DHH family (DHH)

(83-228)

Single-strand DNA-specific exonuclease, C terminal domain (ssDNA-exonuc_C)

(590-734)

RecJ OB domain (RecJ_OB)

(451-556)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A412PQL6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recJ Streptococcus pneumoniae strain D39V

76.622

99.462

0.762
  recJ Bacillus subtilis subsp. subtilis str. 168

37.887

100

0.395