Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   Thiowin_RS10400 Genome accession   NZ_CP121472
Coordinates   2344923..2346176 (+) Length   417 a.a.
NCBI ID   WP_328987662.1    Uniprot ID   -
Organism   Thiorhodovibrio winogradskyi strain DSM 6702     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2339923..2351176
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Thiowin_RS10385 (Thiowin_02135) acs 2340071..2342017 (+) 1947 WP_328987659.1 acetate--CoA ligase -
  Thiowin_RS10390 (Thiowin_02136) - 2342155..2342997 (+) 843 WP_328987660.1 NYN domain-containing protein -
  Thiowin_RS10395 (Thiowin_02137) pilB 2343205..2344917 (+) 1713 WP_328987661.1 type IV-A pilus assembly ATPase PilB Machinery gene
  Thiowin_RS10400 (Thiowin_02138) pilC 2344923..2346176 (+) 1254 WP_328987662.1 type II secretion system F family protein Machinery gene
  Thiowin_RS10405 (Thiowin_02139) pilD 2346222..2347133 (+) 912 WP_328987663.1 A24 family peptidase Machinery gene
  Thiowin_RS10410 (Thiowin_02140) coaE 2347134..2347742 (+) 609 WP_328987664.1 dephospho-CoA kinase -
  Thiowin_RS10415 (Thiowin_02141) - 2347832..2349250 (-) 1419 WP_328987665.1 PhoH family protein -
  Thiowin_RS10420 (Thiowin_02142) - 2349439..2349903 (-) 465 WP_328987666.1 peroxiredoxin -
  Thiowin_RS10425 (Thiowin_02143) - 2350042..2350581 (-) 540 WP_328987667.1 glycine cleavage system protein R -

Sequence

Protein


Download         Length: 417 a.a.        Molecular weight: 45141.36 Da        Isoelectric Point: 9.9949

>NTDB_id=812320 Thiowin_RS10400 WP_328987662.1 2344923..2346176(+) (pilC) [Thiorhodovibrio winogradskyi strain DSM 6702]
MAVAAKQLPGKKQAKAEKSYNFAWEGVDKRGTKVKGETRASSVAMIRADLRRQGVNPTKVRQKTEFSIGSGKKKITSGDL
TVFTRQLATMMTAGVPLVQAYEIVGRGHENPSMQELILAIKNDIESGTAMAAAMAKHPKYFDELVCSLVAAGEQAGVLDV
LLDKIATYKEKTESIKGKIKKALFYPASVIVVAVVVSAVLLVFVIPQFKELFQSFGADLPAFTLLVIGMSEFLQKWWWLI
AMGMGLFGFLIAKLFEKSAKFRALVDRTVLKLPIIGPILNKAAIARFARTLSTMFAAGVPLVEALNSVSGATGNIVYGEA
VLKMREEVATGQSLQLAMRQRNLFPNLVIQMTSIGEESGSLDGMLAKVADFYEEEVDNAVDALSSLLEPLIMVVIGTLVG
GLIVAMYLPIFKLAAVV

Nucleotide


Download         Length: 1254 bp        

>NTDB_id=812320 Thiowin_RS10400 WP_328987662.1 2344923..2346176(+) (pilC) [Thiorhodovibrio winogradskyi strain DSM 6702]
ATGGCTGTCGCAGCAAAACAACTGCCTGGAAAAAAACAGGCCAAGGCCGAGAAAAGCTACAACTTCGCCTGGGAGGGTGT
CGACAAGCGCGGCACCAAAGTCAAGGGAGAGACGCGCGCTTCCAGCGTGGCAATGATTCGTGCCGATCTGCGTCGCCAGG
GGGTGAATCCAACCAAGGTTCGCCAAAAGACAGAATTTTCGATCGGCAGTGGCAAAAAGAAGATCACCAGCGGCGATCTA
ACAGTCTTTACCCGGCAGCTTGCCACCATGATGACCGCTGGTGTGCCTTTGGTGCAGGCTTATGAGATTGTCGGGCGCGG
TCATGAAAACCCCTCGATGCAGGAACTCATCCTGGCGATCAAAAACGATATTGAAAGCGGCACGGCCATGGCGGCAGCCA
TGGCCAAGCATCCCAAGTATTTTGATGAGTTGGTCTGTAGTCTGGTTGCCGCCGGCGAGCAAGCCGGTGTGCTCGATGTG
CTGCTCGACAAGATCGCGACCTACAAGGAAAAGACCGAGTCCATCAAGGGCAAGATCAAGAAGGCGCTCTTTTATCCTGC
CTCGGTCATCGTCGTGGCCGTGGTGGTGTCGGCGGTGCTGCTGGTGTTTGTCATTCCGCAGTTCAAGGAACTCTTTCAGA
GCTTCGGCGCCGATCTGCCGGCCTTTACGCTGCTGGTCATCGGGATGTCGGAGTTTCTGCAAAAGTGGTGGTGGCTGATT
GCCATGGGCATGGGCCTATTCGGCTTCCTAATCGCGAAATTGTTTGAGAAATCGGCTAAGTTCCGCGCCTTGGTCGATCG
TACAGTGCTGAAATTGCCCATTATCGGGCCCATCCTCAACAAGGCGGCCATCGCCCGCTTTGCCCGCACCCTCTCGACCA
TGTTCGCCGCGGGCGTGCCTCTGGTGGAGGCACTGAATTCGGTCTCAGGGGCGACGGGCAACATTGTCTATGGCGAGGCG
GTACTGAAAATGCGCGAGGAGGTTGCCACGGGTCAGAGCTTGCAGTTGGCGATGCGCCAGCGCAATCTATTCCCAAACCT
GGTGATTCAAATGACCTCCATCGGCGAGGAATCCGGCTCGCTTGATGGCATGCTGGCCAAGGTGGCTGACTTCTACGAGG
AAGAAGTCGACAATGCCGTGGATGCATTGAGCAGCCTGCTCGAGCCCCTGATCATGGTCGTCATTGGTACCCTGGTGGGT
GGTCTGATTGTCGCTATGTACCTGCCTATCTTCAAACTCGCCGCAGTGGTGTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(287-409)

Type II secretion system (T2SS), protein F (T2SSF)

(83-206)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Legionella pneumophila strain ERS1305867

59.398

95.683

0.568
  pilC Acinetobacter baylyi ADP1

55.75

95.923

0.535
  pilC Acinetobacter baumannii D1279779

54.95

96.882

0.532
  pilC Pseudomonas stutzeri DSM 10701

54.094

96.643

0.523
  pilG Neisseria gonorrhoeae MS11

50

97.362

0.487
  pilG Neisseria meningitidis 44/76-A

49.754

97.362

0.484
  pilC Vibrio campbellii strain DS40M4

43.108

95.683

0.412
  pilC Vibrio cholerae strain A1552

42.607

95.683

0.408