Detailed information NTG0812321

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: Thiowin_RS10405
• Genome accession: NZ_CP121472
• Coordinates: 2346222..2347133 (+)
• Length: 303 a.a.
• NCBI ID: WP_328987663.1
• Uniprot ID: -
• Organism: Thiorhodovibrio winogradskyi strain DSM 6702
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2341222..2352133

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
Thiowin_RS10390 (Thiowin_02136)	-	2342155..2342997 (+)	843	WP_328987660.1	NYN domain-containing protein	-
Thiowin_RS10395 (Thiowin_02137)	pilB	2343205..2344917 (+)	1713	WP_328987661.1	type IV-A pilus assembly ATPase PilB	Machinery gene
Thiowin_RS10400 (Thiowin_02138)	pilC	2344923..2346176 (+)	1254	WP_328987662.1	type II secretion system F family protein	Machinery gene
Thiowin_RS10405 (Thiowin_02139)	pilD	2346222..2347133 (+)	912	WP_328987663.1	A24 family peptidase	Machinery gene
Thiowin_RS10410 (Thiowin_02140)	coaE	2347134..2347742 (+)	609	WP_328987664.1	dephospho-CoA kinase	-
Thiowin_RS10415 (Thiowin_02141)	-	2347832..2349250 (-)	1419	WP_328987665.1	PhoH family protein	-
Thiowin_RS10420 (Thiowin_02142)	-	2349439..2349903 (-)	465	WP_328987666.1	peroxiredoxin	-
Thiowin_RS10425 (Thiowin_02143)	-	2350042..2350581 (-)	540	WP_328987667.1	glycine cleavage system protein R	-
Thiowin_RS10430 (Thiowin_02144)	dapA	2350904..2351791 (+)	888	WP_328987668.1	4-hydroxy-tetrahydrodipicolinate synthase	-

Sequence

Protein

• Length: 303 a.a.
• Molecular weight: 33330.39 Da
• Isoelectric Point: 5.9263

>NTDB_id=812321 Thiowin_RS10405 WP_328987663.1 2346222..2347133(+) (pilD) [Thiorhodovibrio winogradskyi strain DSM 6702]
MKDIFRVLAETPWLLHSATVLLGLVVGSFLNVVILRLPRMMELEWRQDCAELHARSEPDETDPAREQAVEPEPAPFNLAR
PASHCPICGHRIRAWENLPVLSYLLLRGHCSACRAPIAIRYPLIEILTAVLSLVVVWHFGFSVQAAAALVFTWSMVALAL
IDFDTQLLPDTITLPVLWLGLLLSLFGVFVDAETAIIGAIAGYLSLWSVFQLFRLLTGREGMGRGDFKLLALFGAWMGWQ
ALPQIILLSALPGALIGIALIALGSQEQRAPMPFGPYLAIAGWVSLLWGADITNAYLRWSGLG

Nucleotide

• Length: 912 bp

>NTDB_id=812321 Thiowin_RS10405 WP_328987663.1 2346222..2347133(+) (pilD) [Thiorhodovibrio winogradskyi strain DSM 6702]
ATGAAAGATATCTTTCGCGTCCTCGCTGAGACGCCCTGGCTGCTGCACAGTGCAACTGTGCTTCTGGGGTTGGTGGTCGG
CAGCTTTCTCAATGTCGTCATCCTGCGCCTGCCTCGCATGATGGAGCTGGAATGGCGGCAGGATTGCGCCGAGCTTCATG
CCCGCTCCGAGCCGGATGAAACAGACCCCGCGCGGGAGCAGGCTGTCGAGCCTGAGCCCGCTCCCTTCAACCTGGCCCGT
CCGGCTTCGCATTGTCCGATCTGCGGCCATCGCATCCGTGCCTGGGAGAATCTACCGGTCTTGAGCTATCTGCTGCTGCG
CGGGCACTGCTCGGCCTGTCGTGCGCCCATCGCCATCCGCTATCCACTGATCGAAATCCTGACCGCCGTGCTGAGCCTGG
TGGTGGTCTGGCACTTTGGCTTTAGCGTGCAGGCGGCCGCGGCGCTGGTGTTTACCTGGTCGATGGTGGCGCTGGCGCTG
ATCGACTTTGACACCCAACTGCTGCCCGATACCATCACCCTGCCGGTGCTTTGGCTTGGGTTGCTGCTCAGCCTGTTTGG
GGTTTTCGTCGATGCCGAGACGGCCATTATTGGCGCCATCGCCGGTTATCTCAGTCTGTGGTCAGTGTTTCAGCTGTTCC
GCCTGCTCACTGGCCGCGAGGGCATGGGCCGGGGAGACTTCAAGCTGCTCGCGCTCTTTGGTGCTTGGATGGGTTGGCAG
GCGCTGCCGCAAATCATTTTGCTCTCGGCGCTGCCGGGAGCCCTGATCGGGATTGCGCTGATCGCGCTTGGCAGCCAGGA
GCAGCGCGCGCCCATGCCTTTTGGCCCTTATCTGGCCATTGCCGGTTGGGTCAGCCTGCTGTGGGGCGCGGATATTACCA
ACGCTTATCTGCGTTGGAGCGGTCTGGGCTGA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (149-258)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-139)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	53.401	97.03	0.518
pilD	Vibrio campbellii strain DS40M4	52.901	96.7	0.512
pilD	Acinetobacter baumannii D1279779	49.495	98.02	0.485
pilD	Acinetobacter nosocomialis M2	49.158	98.02	0.482
pilD	Neisseria gonorrhoeae MS11	47.17	87.459	0.413