Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbB   Type   Machinery gene
Locus tag   P4831_RS02160 Genome accession   NZ_CP120842
Coordinates   408026..408415 (+) Length   129 a.a.
NCBI ID   WP_023163755.1    Uniprot ID   A0AAQ0U0J8
Organism   Lactococcus lactis strain ZFM559     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 408026..428261 408026..408415 within 0


Gene organization within MGE regions


Location: 408026..428261
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P4831_RS02160 ssbB 408026..408415 (+) 390 WP_023163755.1 single-stranded DNA-binding protein Machinery gene
  P4831_RS02165 groES 408535..408819 (+) 285 WP_003131589.1 co-chaperone GroES -
  P4831_RS02170 groL 408907..410535 (+) 1629 WP_003131585.1 chaperonin GroEL -
  P4831_RS02175 - 410581..411393 (-) 813 WP_003131583.1 MBL fold metallo-hydrolase -
  P4831_RS02180 - 411564..413006 (-) 1443 WP_010905315.1 cell wall metabolism sensor histidine kinase WalK -
  P4831_RS02185 yycF 412999..413700 (-) 702 WP_003131580.1 response regulator YycF -
  P4831_RS02190 tmk 413878..414513 (+) 636 WP_012897230.1 dTMP kinase -
  P4831_RS02195 - 414646..415506 (+) 861 WP_003131573.1 DNA polymerase III subunit delta' -
  P4831_RS02200 - 415558..416340 (+) 783 WP_010905316.1 stage 0 sporulation family protein -
  P4831_RS02205 yabA 416333..416659 (+) 327 WP_003131570.1 DNA replication initiation control protein YabA -
  P4831_RS02210 rsmI 416659..417534 (+) 876 WP_010905318.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  P4831_RS02215 - 417611..417802 (-) 192 WP_003131566.1 hypothetical protein -
  P4831_RS02220 - 418130..418777 (-) 648 WP_046780917.1 hypothetical protein -
  P4831_RS02225 - 419626..419958 (-) 333 WP_129300062.1 hypothetical protein -
  P4831_RS02230 - 419958..420269 (-) 312 WP_039114619.1 hypothetical protein -
  P4831_RS02235 - 420519..421091 (-) 573 WP_023163758.1 hypothetical protein -
  P4831_RS02240 - 421105..421419 (-) 315 WP_277812581.1 hypothetical protein -
  P4831_RS02245 - 421539..421688 (-) 150 WP_023163760.1 hypothetical protein -
  P4831_RS02250 - 421699..422592 (-) 894 WP_277812582.1 ATP-binding protein -
  P4831_RS02255 - 422604..423446 (-) 843 WP_277812583.1 phage replisome organiser protein -
  P4831_RS02260 - 423455..423781 (-) 327 WP_023163763.1 HTH domain-containing protein -
  P4831_RS13320 - 423768..424031 (-) 264 WP_338329125.1 hypothetical protein -
  P4831_RS02265 - 424028..424216 (-) 189 WP_058207121.1 hypothetical protein -
  P4831_RS02270 - 424283..424525 (-) 243 WP_054247183.1 hypothetical protein -
  P4831_RS02275 - 424564..424833 (-) 270 WP_023163767.1 hypothetical protein -
  P4831_RS02280 - 424830..425348 (-) 519 WP_023163768.1 hypothetical protein -
  P4831_RS02285 - 425353..425547 (-) 195 WP_023163769.1 DUF1655 domain-containing protein -
  P4831_RS02290 - 425793..425969 (-) 177 WP_185961042.1 hypothetical protein -
  P4831_RS02295 - 426115..427005 (+) 891 WP_058207110.1 helix-turn-helix transcriptional regulator -
  P4831_RS02300 - 427062..428261 (+) 1200 WP_277812584.1 site-specific integrase -

Sequence

Protein


Download         Length: 129 a.a.        Molecular weight: 14662.70 Da        Isoelectric Point: 8.3705

>NTDB_id=808765 P4831_RS02160 WP_023163755.1 408026..408415(+) (ssbB) [Lactococcus lactis strain ZFM559]
MNKTMLIGRLTSASEISKTTNDKSYVRVTLAVNRRFKNEKGEREADFISIIIWGKSAETLVSYAKKGSLISIEGEIRTRN
YTDKQNQKHYVTEILGLSYDLLESRATIALRESAIKTEETLLDAEELPF

Nucleotide


Download         Length: 390 bp        

>NTDB_id=808765 P4831_RS02160 WP_023163755.1 408026..408415(+) (ssbB) [Lactococcus lactis strain ZFM559]
ATGAATAAAACCATGTTAATTGGACGCTTAACCAGTGCGTCAGAAATTTCAAAAACAACAAATGATAAATCATATGTCCG
TGTGACCTTGGCAGTCAATCGCCGTTTCAAAAATGAAAAAGGAGAACGAGAGGCAGATTTTATTTCAATTATTATTTGGG
GAAAATCTGCAGAAACTTTAGTTTCTTACGCAAAAAAAGGAAGTCTTATTTCAATTGAAGGAGAAATTAGAACTAGAAAT
TATACGGATAAGCAAAATCAAAAACATTATGTCACAGAAATCTTAGGACTGAGTTATGATTTACTTGAAAGTAGGGCAAC
AATCGCTTTACGAGAAAGCGCTATAAAGACTGAAGAAACCTTACTTGATGCGGAAGAACTCCCTTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(1-95)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbB Lactococcus lactis subsp. cremoris KW2

89.922

100

0.899
  ssbB Streptococcus sobrinus strain NIDR 6715-7

60

100

0.605
  ssbB/cilA Streptococcus pneumoniae TIGR4

56.154

100

0.566
  ssbB/cilA Streptococcus mitis NCTC 12261

55.385

100

0.558
  ssbB/cilA Streptococcus pneumoniae R6

55.385

100

0.558
  ssbB/cilA Streptococcus pneumoniae Rx1

55.385

100

0.558
  ssbB/cilA Streptococcus pneumoniae D39

55.385

100

0.558
  ssbB/cilA Streptococcus mitis SK321

55.385

100

0.558
  ssbA Streptococcus mutans UA159

54.615

100

0.55
  ssb Latilactobacillus sakei subsp. sakei 23K

43.75

86.822

0.38