Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   TSUB_RS16125 Genome accession   NZ_AP023054
Coordinates   3584708..3585808 (-) Length   366 a.a.
NCBI ID   WP_087023577.1    Uniprot ID   -
Organism   Thaumasiovibrio subtropicus strain C4V358     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 3579708..3590808
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  TSUB_RS16095 hemF 3580266..3581189 (-) 924 WP_087023565.1 oxygen-dependent coproporphyrinogen oxidase -
  TSUB_RS16100 tsaC 3581232..3581786 (-) 555 WP_087023567.1 L-threonylcarbamoyladenylate synthase type 1 TsaC -
  TSUB_RS16105 purE 3581955..3582443 (+) 489 WP_087023569.1 5-(carboxyamino)imidazole ribonucleotide mutase -
  TSUB_RS16110 - 3582446..3583561 (+) 1116 WP_087023571.1 5-(carboxyamino)imidazole ribonucleotide synthase -
  TSUB_RS16115 - 3583619..3584173 (-) 555 WP_087023573.1 type I DNA topoisomerase -
  TSUB_RS16120 - 3584235..3584708 (-) 474 WP_087023575.1 DUF494 family protein -
  TSUB_RS16125 dprA 3584708..3585808 (-) 1101 WP_087023577.1 DNA-processing protein DprA Machinery gene
  TSUB_RS16130 - 3585805..3586899 (-) 1095 WP_087023579.1 LysM peptidoglycan-binding domain-containing protein -
  TSUB_RS16135 def 3587021..3587533 (+) 513 WP_087023583.1 peptide deformylase -
  TSUB_RS16140 fmt 3587537..3588484 (+) 948 WP_087023585.1 methionyl-tRNA formyltransferase -
  TSUB_RS16145 rsmB 3588552..3589862 (+) 1311 WP_087023587.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -

Sequence

Protein


Download         Length: 366 a.a.        Molecular weight: 39551.16 Da        Isoelectric Point: 6.6554

>NTDB_id=80854 TSUB_RS16125 WP_087023577.1 3584708..3585808(-) (dprA) [Thaumasiovibrio subtropicus strain C4V358]
MIDNTELWVRLARVPRLGGQGIQKLCQRIPFSSLWSSDDTALRLSGLSDKQLTAFRAPLNASQQHALRWLEADNHHLIHW
GHPDYPYLLSQIASPPPVLFVAGEVTALSKPQLAMVGSRQASIDGREAAYQFAAGLVIEGYTVTSGLALGIDGCAHQGAL
EKGGQTIAVLGSGLSKIYPAAHRELAKQIQSQGALVSEFFPDTAPRPSHFPRRNRIISGLSVGVFVVEAAEKSGSLITVK
YALEQNRDVFALPGSIYNPQSKGCNQLIKSGAKLVETPVDIIEEVGVLTDCTILHQSEEQSRGEDNQQLPFAALLDTVGS
DAIPVDVIAGRCQLPVHEVMMQLLELELQGQVTAVPGGYVRTRRGK

Nucleotide


Download         Length: 1101 bp        

>NTDB_id=80854 TSUB_RS16125 WP_087023577.1 3584708..3585808(-) (dprA) [Thaumasiovibrio subtropicus strain C4V358]
ATGATAGACAACACCGAATTATGGGTTCGACTGGCACGAGTACCACGTCTGGGGGGGCAAGGTATTCAGAAGTTGTGTCA
GCGAATCCCTTTCTCTTCCCTTTGGTCTTCTGACGATACTGCACTTCGCCTGTCTGGTCTTTCTGATAAACAACTCACTG
CTTTTCGCGCCCCTTTAAACGCTTCTCAGCAACATGCTTTACGTTGGCTTGAGGCCGACAATCATCACCTTATCCATTGG
GGACACCCCGATTATCCCTATCTTTTGAGCCAGATAGCTTCGCCACCACCAGTGTTGTTTGTAGCTGGCGAGGTGACGGC
GCTTAGCAAGCCACAGTTGGCCATGGTGGGCAGCCGACAGGCCAGTATTGATGGTCGAGAAGCGGCTTATCAATTCGCAG
CAGGATTAGTGATTGAAGGGTATACTGTCACCAGTGGCTTGGCACTAGGAATTGATGGTTGTGCCCATCAAGGGGCGTTG
GAAAAAGGTGGGCAGACAATCGCGGTGCTGGGATCGGGCTTAAGTAAGATATATCCCGCCGCGCACCGCGAACTGGCAAA
GCAAATTCAATCTCAGGGCGCGTTGGTCTCTGAGTTTTTTCCTGATACAGCACCAAGGCCAAGTCATTTCCCGCGGCGCA
ATCGCATTATAAGCGGGCTCTCTGTGGGGGTGTTTGTTGTGGAAGCGGCGGAGAAGAGTGGGTCGCTGATCACAGTGAAG
TATGCATTAGAGCAAAACCGAGATGTATTTGCTTTACCTGGGTCTATTTATAACCCACAAAGCAAAGGCTGCAACCAGTT
GATTAAAAGTGGTGCTAAACTGGTAGAGACCCCGGTCGACATTATAGAAGAGGTAGGAGTGTTGACTGATTGTACAATTC
TACATCAGTCAGAGGAGCAGAGTCGCGGCGAAGATAATCAGCAATTGCCATTTGCGGCACTGTTAGATACCGTAGGTAGT
GATGCAATACCTGTCGATGTGATTGCAGGTCGCTGTCAGCTACCTGTTCATGAAGTCATGATGCAGTTGTTAGAGTTGGA
GTTACAAGGACAAGTAACCGCAGTTCCCGGTGGCTACGTCAGAACGAGGAGGGGCAAGTGA

Domains

Predicted by InterproScan.

DprA winged helix domain (DprA_WH)

(312-358)

DNA recombination-mediator protein A (DNA_processg_A)

(70-276)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Vibrio campbellii strain DS40M4

52.368

98.087

0.514
  dprA Vibrio cholerae strain A1552

50.824

99.454

0.505
  dprA Glaesserella parasuis strain SC1401

45.628

100

0.456
  dprA Legionella pneumophila strain ERS1305867

42.12

100

0.424
  dprA Haemophilus influenzae Rd KW20

53.497

78.142

0.418
  dprA Neisseria meningitidis strain C311

38.481

100

0.415
  dprA Neisseria meningitidis MC58

38.481

100

0.415
  dprA Neisseria gonorrhoeae MS11

43.26

87.158

0.377
  dprA Neisseria gonorrhoeae strain FA1090

41.846

88.798

0.372

Multiple sequence alignment