Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   RMQ63_RS07395 Genome accession   NZ_CP135063
Coordinates   1529342..1530130 (+) Length   262 a.a.
NCBI ID   WP_023369388.1    Uniprot ID   -
Organism   Streptococcus suis strain ID32563     
Function   repress the expression of comX (predicted from homology)   
Competence regulation

Genomic Context

Location: 1524342..1535130
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RMQ63_RS07375 (RMQ63_07375) - 1524959..1525918 (-) 960 WP_024407233.1 asparaginase -
  RMQ63_RS07380 (RMQ63_07380) - 1525988..1527353 (+) 1366 Protein_1421 Cof-type HAD-IIB family hydrolase -
  RMQ63_RS07385 (RMQ63_07385) - 1527369..1527821 (-) 453 WP_004195772.1 universal stress protein -
  RMQ63_RS07390 (RMQ63_07390) - 1527976..1529190 (+) 1215 WP_014637482.1 pyridoxal phosphate-dependent aminotransferase -
  RMQ63_RS07395 (RMQ63_07395) codY 1529342..1530130 (+) 789 WP_023369388.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  RMQ63_RS07400 (RMQ63_07400) - 1530132..1530683 (+) 552 WP_044673550.1 cysteine hydrolase family protein -
  RMQ63_RS07405 (RMQ63_07405) rplS 1530949..1531296 (+) 348 WP_011921928.1 50S ribosomal protein L19 -
  RMQ63_RS07410 (RMQ63_07410) - 1531485..1532159 (+) 675 WP_012774968.1 hydrolase -
  RMQ63_RS07415 (RMQ63_07415) gatC 1532376..1532678 (+) 303 WP_011921930.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatC -
  RMQ63_RS07420 (RMQ63_07420) gatA 1532678..1534144 (+) 1467 WP_024401542.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatA -

Sequence

Protein


Download         Length: 262 a.a.        Molecular weight: 29334.37 Da        Isoelectric Point: 4.6190

>NTDB_id=808440 RMQ63_RS07395 WP_023369388.1 1529342..1530130(+) (codY) [Streptococcus suis strain ID32563]
MTTLLEKTRNITSILKRSEEQLAEELPYNAIAEHLSAIIDCNSCIINSEGEVLGYHMNYETNNDRVEEFFQNKQFPEGYV
KAVAQVYDTQVNLPVESELTAIPVESRSTYPNGLTTIAPIHVTGIRFGSLIIWRNDEQFHDDDLILVEIAATVVGIQLLN
FQREEDEKNIRRRAAVNMAVNTLSYSEMKAVAAILGELDGNEGQLTASVIADRIGITRSVIVNALRKLESAGIIESRSLG
MKGTYLKVLIPAIFDEIKKRDY

Nucleotide


Download         Length: 789 bp        

>NTDB_id=808440 RMQ63_RS07395 WP_023369388.1 1529342..1530130(+) (codY) [Streptococcus suis strain ID32563]
ATGACAACATTATTAGAGAAGACACGGAATATTACTTCTATTTTGAAGCGTTCCGAAGAGCAATTGGCAGAAGAATTGCC
TTACAATGCCATTGCTGAGCATTTATCAGCTATTATTGACTGCAATTCGTGCATCATTAATAGTGAAGGTGAAGTTTTGG
GATACCACATGAACTATGAGACGAACAATGATCGTGTGGAAGAATTTTTCCAAAACAAACAATTCCCAGAAGGATATGTA
AAAGCAGTTGCGCAGGTTTACGATACGCAGGTTAATTTGCCTGTCGAGAGCGAGTTGACTGCTATCCCTGTCGAATCACG
ATCGACTTATCCAAACGGGCTGACAACGATAGCGCCTATCCACGTAACGGGGATTCGTTTTGGTTCGCTTATTATTTGGC
GGAATGATGAGCAGTTTCACGATGATGATTTGATTTTGGTTGAGATTGCGGCAACAGTAGTTGGTATTCAGTTACTTAAT
TTCCAACGGGAAGAAGACGAGAAGAATATCCGTCGTCGTGCGGCAGTTAATATGGCGGTAAATACGCTATCTTACTCAGA
AATGAAGGCAGTTGCAGCTATTTTGGGTGAATTGGATGGCAATGAGGGGCAATTGACTGCTTCTGTGATTGCAGATCGTA
TCGGTATTACACGCTCGGTGATTGTGAATGCACTGCGTAAGTTGGAGAGTGCAGGGATTATTGAAAGTCGTTCTTTGGGA
ATGAAGGGGACTTATTTGAAAGTTCTTATCCCAGCTATTTTTGATGAAATTAAGAAACGTGACTACTAA

Domains

Predicted by InterProScan.

CodY GAF-like domain (CodY)

(3-182)

CodY helix-turn-helix domain (HTH_CodY)

(202-258)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Lactococcus lactis subsp. lactis strain DGCC12653

59.16

100

0.592
  codY Bacillus subtilis subsp. subtilis str. 168

52.846

93.893

0.496