Detailed information NTG0808439

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: P7C01_RS11865
• Genome accession: NZ_CP120725
• Coordinates: 2578295..2579167 (-)
• Length: 290 a.a.
• NCBI ID: WP_102882237.1
• Uniprot ID: -
• Organism: Pseudomonas danubii strain JDS10PS014
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2573295..2584167

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
P7C01_RS11825 (P7C01_11790)	-	2573527..2574825 (-)	1299	WP_102865469.1	NAD(P)/FAD-dependent oxidoreductase	-
P7C01_RS11830 (P7C01_11795)	-	2574886..2575059 (-)	174	WP_043274580.1	DUF3094 family protein	-
P7C01_RS11835 (P7C01_11800)	-	2575248..2575877 (-)	630	WP_102882240.1	DUF1780 domain-containing protein	-
P7C01_RS11840 (P7C01_11805)	-	2576023..2576490 (+)	468	WP_102882239.1	FAD/FMN-containing dehydrogenase	-
P7C01_RS11845 (P7C01_11810)	-	2576487..2577176 (+)	690	WP_102865472.1	energy-coupling factor ABC transporter permease	-
P7C01_RS11850 (P7C01_11815)	-	2577240..2577455 (+)	216	WP_404942165.1	hypothetical protein	-
P7C01_RS11855 (P7C01_11820)	yacG	2577475..2577678 (-)	204	WP_102865474.1	DNA gyrase inhibitor YacG	-
P7C01_RS11860 (P7C01_11825)	coaE	2577675..2578298 (-)	624	WP_102865475.1	dephospho-CoA kinase	-
P7C01_RS11865 (P7C01_11830)	pilD	2578295..2579167 (-)	873	WP_102882237.1	A24 family peptidase	Machinery gene
P7C01_RS11870 (P7C01_11835)	pilC	2579170..2580387 (-)	1218	WP_102882236.1	type II secretion system F family protein	Machinery gene
P7C01_RS11875 (P7C01_11840)	-	2580613..2581029 (+)	417	WP_102882235.1	pilin	-
P7C01_RS11880 (P7C01_11845)	-	2581269..2581625 (+)	357	WP_102865479.1	BON domain-containing protein	-

Sequence

Protein

• Length: 290 a.a.
• Molecular weight: 32052.21 Da
• Isoelectric Point: 7.0712

>NTDB_id=808439 P7C01_RS11865 WP_102882237.1 2578295..2579167(-) (pilD) [Pseudomonas danubii strain JDS10PS014]
MSLTEAMTLYPLAFVTAALVLGLLVGSFLNVLVWRLPKMLERDWRAQAHEVLGLPPEPVAAPYNLLLPHSQCPHCAQPIR
PWQNIPLLSYLWLRGRCAHCRTAISPRYPLTELACGLISAYVAWHFGFGWPAGLLLILSWGLLAMSLIDADHQLLPDVLV
LPLLWLGLIANSFEVLASLEDALWGAVLGYLCLWSVFWLFKLLTGKDGMGHGDFKLLAMLGAWGGWQILPLTLLLSSLVG
AILGTVMLRLNRANTSTPIPFGPFLAIAGWIALLWGGQMTDFYLQFVGFQ

Nucleotide

• Length: 873 bp

>NTDB_id=808439 P7C01_RS11865 WP_102882237.1 2578295..2579167(-) (pilD) [Pseudomonas danubii strain JDS10PS014]
ATGTCCTTGACTGAAGCCATGACCCTTTACCCCCTGGCCTTCGTGACTGCGGCCCTGGTACTGGGGCTGCTCGTAGGCAG
CTTTCTGAACGTGCTGGTGTGGCGCCTGCCGAAAATGCTTGAACGCGATTGGCGGGCTCAAGCCCACGAAGTGCTGGGAC
TGCCCCCGGAGCCTGTAGCGGCGCCCTACAACCTGCTGCTGCCCCACTCCCAATGCCCCCATTGCGCACAACCGATCCGC
CCCTGGCAAAACATTCCCCTGCTCAGCTATCTGTGGCTGCGGGGCCGTTGCGCCCACTGCAGGACCGCCATCAGCCCGCG
CTACCCACTAACCGAACTGGCTTGCGGGCTGATCTCGGCGTACGTCGCCTGGCACTTCGGTTTTGGCTGGCCCGCGGGCC
TGCTGCTGATCCTCAGTTGGGGGTTACTGGCCATGAGCCTGATCGATGCCGATCACCAACTGCTGCCAGACGTGCTGGTG
TTGCCACTGCTGTGGCTGGGACTGATTGCCAATAGCTTCGAGGTACTGGCGAGCCTGGAGGATGCCCTGTGGGGCGCGGT
ACTCGGCTATCTGTGCCTGTGGTCAGTGTTCTGGCTGTTCAAATTGCTGACCGGCAAGGACGGCATGGGCCACGGCGACT
TCAAGCTGCTAGCGATGCTTGGCGCCTGGGGCGGCTGGCAGATCCTGCCGCTGACCTTGCTCCTGTCCTCGCTGGTGGGA
GCGATTCTCGGCACTGTCATGCTGCGCCTGAACCGGGCCAATACCTCGACGCCCATCCCCTTCGGCCCCTTTCTGGCCAT
TGCCGGCTGGATTGCCTTGCTCTGGGGTGGTCAAATGACCGACTTCTATTTGCAGTTTGTCGGTTTCCAATGA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (20-126)

• Type IV leader peptidase family (Peptidase_A24) (136-244)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	54.035	98.276	0.531
pilD	Vibrio campbellii strain DS40M4	49.291	97.241	0.479
pilD	Acinetobacter baumannii D1279779	50	94.483	0.472
pilD	Acinetobacter nosocomialis M2	50	94.483	0.472
pilD	Neisseria gonorrhoeae MS11	49.259	93.103	0.459