Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   P7C00_RS27625 Genome accession   NZ_CP120724
Coordinates   6201021..6202238 (+) Length   405 a.a.
NCBI ID   WP_404937691.1    Uniprot ID   -
Organism   Pseudomonas sp. JDS08PS003     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 6196021..6207238
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P7C00_RS27610 (P7C00_27510) - 6196677..6199595 (+) 2919 WP_404937690.1 DUF748 domain-containing protein -
  P7C00_RS27615 (P7C00_27515) - 6199783..6200139 (-) 357 WP_346636016.1 BON domain-containing protein -
  P7C00_RS27620 (P7C00_27520) - 6200379..6200795 (-) 417 WP_346636015.1 pilin -
  P7C00_RS27625 (P7C00_27525) pilC 6201021..6202238 (+) 1218 WP_404937691.1 type II secretion system F family protein Machinery gene
  P7C00_RS27630 (P7C00_27530) pilD 6202241..6203113 (+) 873 WP_404937692.1 prepilin peptidase Machinery gene
  P7C00_RS27635 (P7C00_27535) coaE 6203110..6203733 (+) 624 WP_346636012.1 dephospho-CoA kinase -
  P7C00_RS27640 (P7C00_27540) yacG 6203730..6203933 (+) 204 WP_404937693.1 DNA gyrase inhibitor YacG -
  P7C00_RS27645 (P7C00_27545) - 6203953..6204168 (-) 216 WP_346636011.1 hypothetical protein -
  P7C00_RS27650 (P7C00_27550) - 6204232..6204921 (-) 690 WP_346636010.1 energy-coupling factor ABC transporter permease -
  P7C00_RS27655 (P7C00_27555) - 6204918..6205385 (-) 468 WP_346636009.1 FAD/FMN-containing dehydrogenase -
  P7C00_RS27660 (P7C00_27560) - 6205531..6206160 (+) 630 WP_123724495.1 DUF1780 domain-containing protein -
  P7C00_RS27665 (P7C00_27565) - 6206350..6206523 (+) 174 WP_043274580.1 DUF3094 family protein -

Sequence

Protein


Download         Length: 405 a.a.        Molecular weight: 44125.94 Da        Isoelectric Point: 10.7487

>NTDB_id=808414 P7C00_RS27625 WP_404937691.1 6201021..6202238(+) (pilC) [Pseudomonas sp. JDS08PS003]
MTVKSPVASVYLWQGTDGQGHKMAGELSAANPALIRAQLRRQGITPTRVRRKPRVWLRLGQRVKAREIALFTRQLATLMQ
AGVPLLQALEIIAESFVQPLMRQLLASLKRDIEAGSSLATALRRHPRHFDELYCNLVDAGEQAGALDTLLERVATYREKS
ENLKARVKKAMVYPLAVIGVAILVSSILLLKVVPQFQSLFAGFNAQLPLLTQWVIALSHVIQSHGGWLLSAGLLMGGGIR
QAYRRSARLRDAVDQGLLRLPLAGPLLHKSAVARYARTLATTFAAGVPLVQALDSVAGASGNKVYRQAVERIRQQVASGM
QLNFAMRASGVFPTMAIQMTAIGEESGMLDHLLEKVAAHYEVEVDHLVDSLTSLMEPLIMVLLGSIVGALVVAMYLPIFQ
LGTAI

Nucleotide


Download         Length: 1218 bp        

>NTDB_id=808414 P7C00_RS27625 WP_404937691.1 6201021..6202238(+) (pilC) [Pseudomonas sp. JDS08PS003]
ATGACGGTAAAATCACCCGTTGCCAGCGTCTATCTGTGGCAAGGCACCGACGGCCAGGGCCACAAGATGGCCGGCGAGTT
GAGCGCTGCAAACCCGGCGCTGATCCGAGCCCAATTGCGCAGGCAGGGCATCACTCCAACTCGGGTACGCCGCAAACCCA
GGGTCTGGTTGCGACTGGGTCAGCGGGTCAAGGCCCGGGAGATCGCCCTGTTCACCCGGCAACTGGCAACCCTGATGCAG
GCCGGCGTGCCCCTGCTGCAAGCCTTGGAAATCATTGCCGAGAGTTTCGTCCAGCCGTTGATGCGCCAACTGCTGGCCAG
CCTCAAGCGCGACATCGAGGCCGGCTCCAGCCTGGCCACGGCGCTGCGCCGGCATCCGCGCCACTTTGACGAGCTGTACT
GCAATCTGGTGGATGCCGGTGAACAGGCCGGAGCCCTGGATACCCTGTTGGAAAGGGTCGCCACCTACAGGGAAAAAAGC
GAGAACCTCAAGGCCCGGGTAAAAAAGGCCATGGTCTACCCCCTGGCGGTGATCGGCGTAGCCATCCTGGTCAGCAGCAT
TCTATTGCTCAAGGTGGTTCCCCAATTCCAGAGCCTGTTCGCCGGGTTCAATGCCCAATTGCCGCTACTGACCCAATGGG
TCATCGCCCTTTCCCACGTCATCCAGAGCCACGGCGGCTGGTTGCTCAGTGCCGGCCTGCTGATGGGGGGCGGGATCAGG
CAGGCCTATCGGCGCTCGGCGCGCCTGCGGGACGCTGTGGATCAGGGACTGCTGCGCCTGCCCTTGGCCGGCCCCCTGCT
GCACAAGTCCGCAGTGGCCCGCTACGCCCGCACACTCGCCACCACCTTCGCGGCTGGCGTGCCCCTGGTTCAGGCCCTGG
ATTCAGTGGCCGGAGCCAGTGGCAACAAGGTCTACAGGCAAGCGGTGGAGCGCATCCGCCAACAGGTGGCCAGTGGCATG
CAACTGAACTTTGCCATGCGCGCCAGCGGCGTCTTCCCTACTATGGCGATCCAGATGACCGCCATCGGTGAAGAATCCGG
AATGCTGGATCATCTGCTGGAAAAAGTCGCAGCGCATTATGAGGTCGAGGTGGACCACTTGGTCGACAGCCTGACCAGCC
TCATGGAGCCGTTGATCATGGTCCTCCTGGGCAGTATCGTCGGCGCCCTGGTGGTAGCCATGTACCTGCCCATCTTTCAA
CTCGGTACAGCGATCTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(276-397)

Type II secretion system (T2SS), protein F (T2SSF)

(71-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

56.543

100

0.565
  pilC Acinetobacter baylyi ADP1

54.054

100

0.543
  pilC Acinetobacter baumannii D1279779

52.228

99.753

0.521
  pilC Legionella pneumophila strain ERS1305867

47.932

100

0.486
  pilC Vibrio campbellii strain DS40M4

42.822

99.753

0.427
  pilC Vibrio cholerae strain A1552

42.857

96.79

0.415
  pilG Neisseria meningitidis 44/76-A

41.604

98.519

0.41
  pilG Neisseria gonorrhoeae MS11

41.919

97.778

0.41
  pilC Thermus thermophilus HB27

37.5

98.765

0.37