Detailed information NTG0808415

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: P7C00_RS27630
• Genome accession: NZ_CP120724
• Coordinates: 6202241..6203113 (+)
• Length: 290 a.a.
• NCBI ID: WP_404937692.1
• Uniprot ID: -
• Organism: Pseudomonas sp. JDS08PS003
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 6197241..6208113

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
P7C00_RS27615 (P7C00_27515)	-	6199783..6200139 (-)	357	WP_346636016.1	BON domain-containing protein	-
P7C00_RS27620 (P7C00_27520)	-	6200379..6200795 (-)	417	WP_346636015.1	pilin	-
P7C00_RS27625 (P7C00_27525)	pilC	6201021..6202238 (+)	1218	WP_404937691.1	type II secretion system F family protein	Machinery gene
P7C00_RS27630 (P7C00_27530)	pilD	6202241..6203113 (+)	873	WP_404937692.1	prepilin peptidase	Machinery gene
P7C00_RS27635 (P7C00_27535)	coaE	6203110..6203733 (+)	624	WP_346636012.1	dephospho-CoA kinase	-
P7C00_RS27640 (P7C00_27540)	yacG	6203730..6203933 (+)	204	WP_404937693.1	DNA gyrase inhibitor YacG	-
P7C00_RS27645 (P7C00_27545)	-	6203953..6204168 (-)	216	WP_346636011.1	hypothetical protein	-
P7C00_RS27650 (P7C00_27550)	-	6204232..6204921 (-)	690	WP_346636010.1	energy-coupling factor ABC transporter permease	-
P7C00_RS27655 (P7C00_27555)	-	6204918..6205385 (-)	468	WP_346636009.1	FAD/FMN-containing dehydrogenase	-
P7C00_RS27660 (P7C00_27560)	-	6205531..6206160 (+)	630	WP_123724495.1	DUF1780 domain-containing protein	-
P7C00_RS27665 (P7C00_27565)	-	6206350..6206523 (+)	174	WP_043274580.1	DUF3094 family protein	-
P7C00_RS27670 (P7C00_27570)	-	6206584..6207882 (+)	1299	WP_102865469.1	NAD(P)/FAD-dependent oxidoreductase	-

Sequence

Protein

• Length: 290 a.a.
• Molecular weight: 32037.26 Da
• Isoelectric Point: 7.3655

>NTDB_id=808415 P7C00_RS27630 WP_404937692.1 6202241..6203113(+) (pilD) [Pseudomonas sp. JDS08PS003]
MSLTEVMTLYPMAFVTAALVLGLLVGSFLNVLVWRLPKMLERDWRAQAHEVLGLAPEPVTAPYNLLLPHSQCPHCAQPIR
PWENIPLLSYLWLRGRCAHCRTAISPRYPLTELACGLISAFVAWHFGFGWPAGLLLILSWGLLAMSLIDADHQLLPDVLV
LPLLWLGLIANSFGLLASLEDALWGAVLGYLCLWSVFWLFKLLTGKDGMGHGDFKLLAMLGAWGGWQILPLTLLLSSLVG
AILGTVLLRLNRAKTSTPIPFGPFLAIAGWIALLWSGQITDFYLQFVGFQ

Nucleotide

• Length: 873 bp

>NTDB_id=808415 P7C00_RS27630 WP_404937692.1 6202241..6203113(+) (pilD) [Pseudomonas sp. JDS08PS003]
ATGTCCTTGACTGAAGTCATGACCCTTTACCCCATGGCCTTCGTGACTGCCGCCCTGGTGCTGGGGCTACTCGTGGGCAG
CTTTCTGAACGTGCTGGTGTGGCGTCTGCCGAAGATGCTTGAACGCGACTGGCGGGCTCAGGCCCACGAAGTGCTGGGAC
TGGCCCCCGAGCCTGTGACGGCGCCCTACAACCTGCTGCTGCCCCACTCCCAGTGCCCCCATTGCGCACAACCGATCCGG
CCCTGGGAGAACATCCCCCTGCTCAGCTATCTGTGGCTGCGGGGCCGTTGTGCTCACTGCAGGACCGCCATCAGCCCGCG
CTACCCGCTGACCGAACTGGCTTGCGGGCTGATCTCGGCGTTCGTCGCCTGGCACTTCGGTTTCGGCTGGCCCGCGGGCC
TGCTGCTGATCCTCAGCTGGGGGCTGCTGGCCATGAGCCTGATCGACGCCGATCACCAACTGCTGCCGGACGTGCTGGTG
TTGCCACTGCTGTGGTTGGGACTGATCGCCAACAGCTTCGGGCTGCTGGCGAGCCTGGAGGATGCCTTGTGGGGCGCAGT
GCTCGGCTATCTGTGCCTGTGGTCGGTGTTCTGGCTGTTCAAACTGCTGACCGGCAAGGACGGCATGGGCCACGGCGACT
TCAAGCTGTTGGCGATGCTTGGCGCCTGGGGCGGCTGGCAGATCCTGCCGCTGACCTTGCTCCTGTCTTCCCTGGTGGGA
GCGATTCTCGGCACTGTCCTGTTGCGCCTGAACCGGGCCAAAACTTCGACGCCCATCCCCTTCGGCCCCTTTCTGGCCAT
TGCCGGCTGGATTGCCTTGCTCTGGAGTGGTCAAATAACCGACTTCTATTTGCAGTTTGTCGGTTTCCAATGA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (20-126)

• Type IV leader peptidase family (Peptidase_A24) (136-244)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	53.546	97.241	0.521
pilD	Vibrio campbellii strain DS40M4	50	97.241	0.486
pilD	Acinetobacter baumannii D1279779	49.27	94.483	0.466
pilD	Acinetobacter nosocomialis M2	49.27	94.483	0.466
pilD	Neisseria gonorrhoeae MS11	48.519	93.103	0.452