Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   P6988_RS04020 Genome accession   NZ_CP120719
Coordinates   849850..851214 (+) Length   454 a.a.
NCBI ID   WP_277684643.1    Uniprot ID   -
Organism   Vibrio coralliilyticus strain Rb102     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 844850..856214
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P6988_RS04000 (P6988_04000) pilM 847288..848205 (+) 918 WP_038165013.1 pilus assembly protein PilM -
  P6988_RS04005 (P6988_04005) - 848195..848752 (+) 558 WP_277684640.1 PilN domain-containing protein -
  P6988_RS04010 (P6988_04010) pilO 848745..849335 (+) 591 WP_277684641.1 type 4a pilus biogenesis protein PilO -
  P6988_RS04015 (P6988_04015) - 849325..849837 (+) 513 WP_277684642.1 pilus assembly protein PilP -
  P6988_RS04020 (P6988_04020) pilQ 849850..851214 (+) 1365 WP_277684643.1 type IV pilus secretin PilQ Machinery gene
  P6988_RS04025 (P6988_04025) aroK 851391..851909 (+) 519 WP_006957155.1 shikimate kinase AroK -
  P6988_RS04030 (P6988_04030) aroB 851941..853029 (+) 1089 WP_277684644.1 3-dehydroquinate synthase -
  P6988_RS26635 - 853134..853466 (+) 333 Protein_736 ATP-binding protein -
  P6988_RS26640 - 853995..854573 (+) 579 Protein_737 SPOR domain-containing protein -
  P6988_RS04040 (P6988_04040) - 854643..855470 (+) 828 WP_006957149.1 Dam family site-specific DNA-(adenine-N6)-methyltransferase -

Sequence

Protein


Download         Length: 454 a.a.        Molecular weight: 49243.29 Da        Isoelectric Point: 4.6446

>NTDB_id=808297 P6988_RS04020 WP_277684643.1 849850..851214(+) (pilQ) [Vibrio coralliilyticus strain Rb102]
MVCKRARWFSLLLFGLVVTHNAASSEEMKPELEIEGKVSDTLSVNFQDIPVRQVLQQIADYNDFNLVVSDAVSGNLTLRV
KEVPWPQLLDIILRMKGLEKRIDGSVLLVATAAEIAQFRQQKLEQEKVAAELQPLESEIIAVRFAKAADIAALLSDSAAT
QMLSERGAISIDTRTNSLLIRDVAINIQAMKAIITALDVPVKQVQIEARIVSLNEGDLQELGVRWGFSSTNGSHSVGGSI
ENNLANLNLYGDSDSSLDDFLNVNLAATSVNASTIAFQVAKLGSDTLLDLELSALQRESRAEVISSPRLITTNKQPAYIE
QGTEIPYLEAASSGATSVNFKKAVLSLKVTPQITSDNRLILDLNVTQDRPGQVVKTGTGEAVAIDTQRIGTQVLVNNGET
IVLGGIYQHSVSDTVDQVPLLGDIPLLGALFRRTYQQMGKSELLIFVTPKVVTP

Nucleotide


Download         Length: 1365 bp        

>NTDB_id=808297 P6988_RS04020 WP_277684643.1 849850..851214(+) (pilQ) [Vibrio coralliilyticus strain Rb102]
ATGGTTTGTAAGAGAGCAAGGTGGTTCAGTTTGCTGCTGTTTGGTTTGGTGGTTACGCATAATGCAGCAAGCAGTGAGGA
GATGAAGCCTGAACTTGAGATAGAGGGAAAGGTGTCAGACACGCTTTCCGTCAATTTTCAGGATATTCCGGTGCGCCAGG
TATTGCAGCAGATTGCGGATTACAACGATTTTAACCTGGTTGTGTCAGATGCCGTGTCTGGCAATCTGACCCTGAGAGTG
AAGGAGGTCCCGTGGCCACAACTGCTTGATATCATTTTGCGTATGAAAGGATTAGAGAAGCGCATCGATGGCAGTGTGTT
GCTGGTGGCAACGGCGGCTGAAATTGCTCAGTTCAGACAACAGAAGTTGGAACAGGAAAAAGTCGCGGCTGAGCTTCAAC
CGTTAGAGTCTGAGATCATTGCCGTGAGATTTGCCAAAGCGGCAGATATTGCGGCATTACTGAGCGATAGCGCTGCGACG
CAGATGTTGTCTGAACGAGGGGCGATTTCAATCGATACTCGAACCAATAGCCTATTAATTCGCGATGTTGCTATCAATAT
TCAAGCGATGAAGGCGATCATTACGGCATTAGATGTGCCGGTGAAACAAGTACAAATTGAGGCGCGTATAGTTAGCTTGA
ATGAAGGTGATTTACAGGAGTTGGGTGTGCGTTGGGGGTTCAGTTCGACAAACGGCAGTCACAGTGTGGGGGGCTCGATA
GAAAATAACTTAGCCAATCTCAATCTGTATGGTGATTCGGACTCGTCACTGGACGATTTTCTCAACGTCAACTTAGCGGC
GACGTCCGTGAATGCCTCGACGATTGCTTTTCAGGTCGCCAAGCTGGGCAGTGACACTTTACTGGATTTAGAACTGTCAG
CGTTACAAAGAGAATCGAGGGCGGAAGTCATATCCAGCCCGCGTCTGATTACGACTAACAAGCAACCTGCTTACATTGAG
CAGGGTACTGAAATTCCTTATTTAGAGGCAGCATCAAGCGGTGCAACCAGCGTGAATTTTAAAAAAGCAGTGCTAAGTTT
AAAAGTCACCCCGCAAATCACATCGGATAACCGTTTGATTCTCGATCTGAATGTCACCCAAGATAGGCCGGGTCAAGTGG
TCAAAACCGGCACTGGGGAAGCTGTTGCGATAGACACACAACGTATCGGTACTCAGGTGCTGGTCAATAATGGCGAAACC
ATTGTTCTGGGAGGAATTTATCAGCACAGTGTTTCGGATACGGTCGATCAGGTTCCGTTGTTAGGCGACATTCCTTTGCT
AGGTGCTCTTTTTCGACGAACTTATCAGCAAATGGGTAAGAGCGAGTTGTTGATTTTTGTAACGCCAAAAGTAGTTACGC
CTTAA

Domains

Predicted by InterproScan.

Bacterial type II/III secretion system short domain (Secretin_N)

(138-203)

Bacterial type II and III secretion system protein (Secretin)

(294-452)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Vibrio cholerae O1 biovar El Tor strain E7946

70.32

96.476

0.678
  pilQ Vibrio cholerae strain A1552

70.32

96.476

0.678
  pilQ Vibrio campbellii strain DS40M4

70.183

96.035

0.674
  pilQ Legionella pneumophila strain Lp02

46.89

92.07

0.432
  pilQ Legionella pneumophila strain ERS1305867

46.89

92.07

0.432
  comQ Acinetobacter baylyi ADP1

42.534

97.357

0.414
  pilQ Pseudomonas aeruginosa PAK

43.619

94.934

0.414
  pilQ Acinetobacter baumannii strain A118

38.512

100

0.388
  pilQ Acinetobacter baumannii D1279779

38.512

100

0.388
  comE Haemophilus influenzae 86-028NP

41.568

92.731

0.385
  comE Haemophilus influenzae Rd KW20

42.439

90.308

0.383