Detailed information
Bioinformatically predicted
Overview
| Name | pilA | Type | Machinery gene |
| Locus tag | RI132_RS12090 | Genome accession | NZ_CP134783 |
| Coordinates | 2629962..2630405 (+) | Length | 147 a.a. |
| NCBI ID | WP_013571141.1 | Uniprot ID | - |
| Organism | Vibrio vulnificus strain GCU-01 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 2624962..2635405
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| RI132_RS12075 (RI132_12075) | pdhR | 2627031..2627798 (-) | 768 | WP_047108811.1 | pyruvate dehydrogenase complex transcriptional repressor PdhR | - |
| RI132_RS12080 (RI132_12080) | ampD | 2628187..2628759 (-) | 573 | WP_047108812.1 | 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD | - |
| RI132_RS12085 (RI132_12085) | nadC | 2628852..2629739 (+) | 888 | WP_047108814.1 | carboxylating nicotinate-nucleotide diphosphorylase | - |
| RI132_RS12090 (RI132_12090) | pilA | 2629962..2630405 (+) | 444 | WP_013571141.1 | pilin | Machinery gene |
| RI132_RS12095 (RI132_12095) | pilB | 2630405..2632093 (+) | 1689 | WP_047108816.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| RI132_RS12100 (RI132_12100) | pilC | 2632142..2633368 (+) | 1227 | WP_047108818.1 | type II secretion system F family protein | Machinery gene |
| RI132_RS12105 (RI132_12105) | pilD | 2633462..2634331 (+) | 870 | WP_047108820.1 | A24 family peptidase | Machinery gene |
| RI132_RS12110 (RI132_12110) | coaE | 2634333..2634941 (+) | 609 | WP_039554617.1 | dephospho-CoA kinase | - |
Sequence
Protein
Download Length: 147 a.a. Molecular weight: 15402.59 Da Isoelectric Point: 9.9044
>NTDB_id=807906 RI132_RS12090 WP_013571141.1 2629962..2630405(+) (pilA) [Vibrio vulnificus strain GCU-01]
MKKLNKTKKQQGFTLIELMIVVAIIGVLAAVAIPAYQNYVQKTEVASASATVRGLLTNIDMYQQENGGTFPNNANLVGGT
STMNALGTITLLPVGTSGGTATFAFTEGTLKGKTASVQYSKNNTTGWSCATKNVPADSRPNSCTATY
MKKLNKTKKQQGFTLIELMIVVAIIGVLAAVAIPAYQNYVQKTEVASASATVRGLLTNIDMYQQENGGTFPNNANLVGGT
STMNALGTITLLPVGTSGGTATFAFTEGTLKGKTASVQYSKNNTTGWSCATKNVPADSRPNSCTATY
Nucleotide
Download Length: 444 bp
>NTDB_id=807906 RI132_RS12090 WP_013571141.1 2629962..2630405(+) (pilA) [Vibrio vulnificus strain GCU-01]
ATGAAGAAATTGAACAAAACCAAGAAACAACAAGGTTTTACCTTGATTGAGTTAATGATAGTGGTGGCGATTATTGGTGT
ATTGGCTGCTGTTGCTATTCCAGCGTATCAGAATTACGTTCAAAAAACTGAAGTTGCATCGGCATCAGCAACAGTAAGAG
GATTACTAACAAACATTGATATGTATCAGCAAGAAAATGGCGGAACTTTTCCAAACAATGCCAATTTAGTTGGCGGCACT
TCAACAATGAATGCTCTTGGTACCATAACACTGTTGCCAGTTGGTACTAGTGGTGGAACAGCAACTTTTGCCTTTACCGA
AGGTACACTCAAAGGCAAAACTGCCTCAGTCCAGTACTCGAAAAACAACACTACTGGTTGGAGCTGTGCGACAAAAAATG
TACCTGCAGATTCTCGTCCAAATAGTTGTACTGCCACTTATTAA
ATGAAGAAATTGAACAAAACCAAGAAACAACAAGGTTTTACCTTGATTGAGTTAATGATAGTGGTGGCGATTATTGGTGT
ATTGGCTGCTGTTGCTATTCCAGCGTATCAGAATTACGTTCAAAAAACTGAAGTTGCATCGGCATCAGCAACAGTAAGAG
GATTACTAACAAACATTGATATGTATCAGCAAGAAAATGGCGGAACTTTTCCAAACAATGCCAATTTAGTTGGCGGCACT
TCAACAATGAATGCTCTTGGTACCATAACACTGTTGCCAGTTGGTACTAGTGGTGGAACAGCAACTTTTGCCTTTACCGA
AGGTACACTCAAAGGCAAAACTGCCTCAGTCCAGTACTCGAAAAACAACACTACTGGTTGGAGCTGTGCGACAAAAAATG
TACCTGCAGATTCTCGTCCAAATAGTTGTACTGCCACTTATTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilA | Vibrio cholerae O1 biovar El Tor strain E7946 |
40.523 |
100 |
0.422 |
| pilA | Vibrio cholerae strain A1552 |
40.523 |
100 |
0.422 |
| pilA | Vibrio cholerae C6706 |
40.523 |
100 |
0.422 |
| pilA | Vibrio parahaemolyticus RIMD 2210633 |
47.692 |
88.435 |
0.422 |
| pilA | Pseudomonas aeruginosa PAK |
40.268 |
100 |
0.408 |
| pilA | Ralstonia pseudosolanacearum GMI1000 |
38.194 |
97.959 |
0.374 |
| pilA2 | Legionella pneumophila str. Paris |
36.242 |
100 |
0.367 |
| pilA/pilA1 | Eikenella corrodens VA1 |
35.294 |
100 |
0.367 |
| pilA/pilAI | Pseudomonas stutzeri DSM 10701 |
34.868 |
100 |
0.361 |