Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   LHUE2_RS04645 Genome accession   NZ_CP120688
Coordinates   949617..950858 (+) Length   413 a.a.
NCBI ID   WP_049169077.1    Uniprot ID   -
Organism   Lacticaseibacillus huelsenbergensis strain DSM 115424     
Function   facilitate localization of RecA (predicted from homology)   
Homologous recombination

Genomic Context

Location: 944617..955858
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LHUE2_RS04625 (LHUE2_000925) yfmH 945710..947005 (+) 1296 WP_049169080.1 EF-P 5-aminopentanol modification-associated protein YfmH -
  LHUE2_RS04630 (LHUE2_000926) ymfI 947002..947730 (+) 729 WP_049169079.1 elongation factor P 5-aminopentanone reductase -
  LHUE2_RS04635 (LHUE2_000927) - 947817..948755 (+) 939 WP_049169078.1 helix-turn-helix domain-containing protein -
  LHUE2_RS04640 (LHUE2_000928) pgsA 948752..949345 (+) 594 WP_025012513.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  LHUE2_RS04645 (LHUE2_000929) cinA 949617..950858 (+) 1242 WP_049169077.1 competence/damage-inducible protein A Machinery gene
  LHUE2_RS04650 (LHUE2_000930) recA 950913..951956 (+) 1044 WP_049169076.1 recombinase RecA Machinery gene
  LHUE2_RS04655 (LHUE2_000931) rny 952558..954129 (+) 1572 WP_010489446.1 ribonuclease Y -
  LHUE2_RS04660 (LHUE2_000932) - 954275..954928 (-) 654 WP_049169075.1 YigZ family protein -

Sequence

Protein


Download         Length: 413 a.a.        Molecular weight: 44290.73 Da        Isoelectric Point: 6.6420

>NTDB_id=807835 LHUE2_RS04645 WP_049169077.1 949617..950858(+) (cinA) [Lacticaseibacillus huelsenbergensis strain DSM 115424]
MQAEIIAVGTEILMGQITNTNGAYMAKQLAALGIASYHQQVVGDNAQRLADAISLAEKRSDIVILIGGLGPTPDDLTKQT
LAAHLNLPLVEDADAMAKLAARVKQQQRPMTPNNKLQAMYPQGADILVNRIGLAVGAWVEQHQHAYVLLPGPPKEFIPMV
DHELLPHLAKYSGHHEAFVSRVMRFFGVGESQLVTDLGDLIAKQTNPTLATYIKDHEVTIRVTASGETQTDAEAKLEPVI
RAIMDREGRYFYGYGDDNSLAKELVKALAATDKQITAAESLTAGAFQAALGDVPGVSNYFKGGFVTYALATKAAFLNIDA
RELAAHGVVSEFTAKAMAEHARQRAAADIAVSFTGVAGPDTLEGQPAGTVWIGLARMGQAPVAQVYHFPGGRNDVRKRAV
MTGMMIALKSLRD

Nucleotide


Download         Length: 1242 bp        

>NTDB_id=807835 LHUE2_RS04645 WP_049169077.1 949617..950858(+) (cinA) [Lacticaseibacillus huelsenbergensis strain DSM 115424]
ATGCAGGCAGAAATTATTGCTGTCGGAACTGAAATTCTGATGGGACAGATTACTAATACTAATGGCGCCTATATGGCTAA
ACAGTTGGCCGCTTTAGGCATTGCCAGCTATCATCAACAGGTTGTCGGTGACAATGCGCAACGCCTGGCTGATGCGATCA
GCTTAGCCGAAAAACGCAGTGACATTGTGATTTTGATCGGTGGTTTAGGACCCACACCAGATGACCTGACGAAACAAACG
TTGGCGGCTCATCTGAATTTGCCGTTGGTTGAAGATGCGGACGCCATGGCAAAACTGGCGGCGCGGGTTAAACAACAGCA
ACGGCCGATGACGCCAAATAATAAGTTACAGGCGATGTATCCGCAAGGTGCTGATATATTGGTTAATCGCATCGGGCTGG
CAGTCGGTGCCTGGGTCGAACAACACCAACATGCCTATGTACTACTGCCTGGGCCGCCTAAGGAATTTATCCCAATGGTT
GATCATGAGCTATTGCCTCATTTGGCCAAGTATAGCGGCCATCATGAAGCTTTTGTCAGCCGCGTCATGCGCTTCTTTGG
TGTTGGTGAATCACAATTGGTGACGGATTTGGGTGATTTAATTGCCAAGCAGACGAATCCGACACTGGCAACGTATATCA
AGGATCATGAAGTGACCATTCGAGTGACGGCTAGTGGTGAGACCCAGACAGACGCTGAAGCAAAATTGGAACCGGTGATT
CGCGCCATTATGGATCGCGAGGGACGTTACTTTTATGGTTATGGTGATGATAATAGCCTCGCTAAAGAGTTGGTCAAGGC
ATTAGCGGCGACCGACAAGCAAATAACGGCAGCGGAGAGCTTGACAGCCGGTGCGTTTCAGGCAGCTTTGGGGGATGTTC
CCGGCGTCTCGAATTATTTCAAAGGCGGTTTTGTGACGTACGCCTTAGCCACTAAAGCAGCATTTTTGAATATTGATGCG
CGTGAGTTAGCGGCTCATGGGGTAGTGAGTGAATTTACTGCCAAAGCAATGGCCGAGCATGCCCGTCAGCGGGCTGCGGC
CGATATTGCAGTCAGTTTTACCGGCGTGGCAGGGCCCGACACACTGGAAGGCCAGCCAGCGGGGACAGTTTGGATCGGCT
TGGCGCGGATGGGCCAGGCGCCGGTTGCACAGGTTTATCATTTTCCCGGTGGCCGCAATGATGTGCGCAAACGCGCGGTT
ATGACTGGCATGATGATCGCATTGAAGAGCTTGCGGGATTAA

Domains

Predicted by InterproScan.

Damage-inducible protein CinA KH domain (CinA_KH)

(180-253)

Competence-damaged protein (CinA)

(258-409)

Probable molybdopterin binding domain (MoCF_biosynth)

(5-169)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Streptococcus mitis SK321

50.831

100

0.518
  cinA Streptococcus mitis NCTC 12261

50.831

100

0.518
  cinA Streptococcus pneumoniae TIGR4

50.119

100

0.511
  cinA Streptococcus mutans UA159

50.725

100

0.508
  cinA Streptococcus pneumoniae Rx1

49.644

100

0.506
  cinA Streptococcus pneumoniae R6

49.644

100

0.506
  cinA Streptococcus pneumoniae D39

49.406

100

0.504
  cinA Bacillus subtilis subsp. subtilis str. 168

44.769

99.516

0.446
  cinA Streptococcus suis isolate S10

42.147

92.494

0.39