Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbB   Type   Machinery gene
Locus tag   P3X63_RS20160 Genome accession   NZ_CP120679
Coordinates   3895590..3895931 (-) Length   113 a.a.
NCBI ID   WP_077736056.1    Uniprot ID   -
Organism   Bacillus sp. HSf4     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3890590..3900931
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P3X63_RS20130 (P3X63_20130) srlD 3891211..3891996 (-) 786 WP_026589023.1 sorbitol-6-phosphate dehydrogenase -
  P3X63_RS20135 (P3X63_20135) - 3892011..3892379 (-) 369 WP_026589024.1 PTS glucitol/sorbitol transporter subunit IIA -
  P3X63_RS20140 (P3X63_20140) - 3892402..3893409 (-) 1008 WP_077736059.1 PTS glucitol/sorbitol transporter subunit IIB -
  P3X63_RS20145 (P3X63_20145) - 3893424..3893972 (-) 549 WP_026589026.1 PTS glucitol/sorbitol transporter subunit IIC -
  P3X63_RS20150 (P3X63_20150) - 3893969..3894412 (-) 444 WP_077736058.1 transcriptional regulator GutM -
  P3X63_RS20155 (P3X63_20155) - 3894409..3895365 (-) 957 WP_026589028.1 sugar-binding transcriptional regulator -
  P3X63_RS20160 (P3X63_20160) ssbB 3895590..3895931 (-) 342 WP_077736056.1 single-stranded DNA-binding protein Machinery gene
  P3X63_RS20165 (P3X63_20165) - 3896036..3896407 (-) 372 WP_077736055.1 hypothetical protein -
  P3X63_RS20170 (P3X63_20170) - 3896571..3896984 (+) 414 WP_026589031.1 YwpF-like family protein -
  P3X63_RS20175 (P3X63_20175) mscL 3897028..3897411 (-) 384 WP_026589032.1 large conductance mechanosensitive channel protein MscL -
  P3X63_RS20180 (P3X63_20180) fabZ 3897481..3897915 (-) 435 WP_026589033.1 3-hydroxyacyl-ACP dehydratase FabZ -
  P3X63_RS20185 (P3X63_20185) - 3898128..3898955 (-) 828 WP_277691759.1 flagellar hook-basal body protein -
  P3X63_RS20190 (P3X63_20190) - 3899004..3899843 (-) 840 WP_026589035.1 flagellar hook-basal body protein -

Sequence

Protein


Download         Length: 113 a.a.        Molecular weight: 12544.36 Da        Isoelectric Point: 10.0043

>NTDB_id=807696 P3X63_RS20160 WP_077736056.1 3895590..3895931(-) (ssbB) [Bacillus sp. HSf4]
MFNQIMLVGRLTKDPELRYTPDGVPVANITLAVGRYFRNAAGEMETDFINCTLWRKTAENTAAYCRKGSIIGLAGRIQTR
NGIDSEGNRFFKTEVVARSVRFIGGKAREPADA

Nucleotide


Download         Length: 342 bp        

>NTDB_id=807696 P3X63_RS20160 WP_077736056.1 3895590..3895931(-) (ssbB) [Bacillus sp. HSf4]
ATGTTTAATCAGATCATGCTGGTCGGGCGTTTGACGAAGGACCCGGAGCTTCGGTACACACCGGACGGCGTCCCGGTGGC
GAACATTACCTTGGCTGTCGGCCGGTATTTCAGAAATGCAGCCGGCGAAATGGAGACGGACTTTATCAATTGCACACTGT
GGCGCAAAACGGCTGAGAACACGGCTGCATATTGCAGAAAAGGCTCGATCATCGGGCTGGCTGGAAGAATTCAGACCCGA
AATGGGATTGATTCAGAAGGAAACCGGTTCTTTAAAACCGAAGTCGTTGCCCGTTCAGTACGATTTATAGGCGGAAAGGC
CCGTGAACCAGCCGATGCCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbB Bacillus subtilis subsp. subtilis str. 168

63.964

98.23

0.628
  ssbA Bacillus subtilis subsp. subtilis str. 168

58.491

93.805

0.549
  ssb Latilactobacillus sakei subsp. sakei 23K

53.125

84.956

0.451
  ssb Vibrio cholerae strain A1552

39.474

100

0.398
  ssbA Streptococcus mutans UA159

39.815

95.575

0.381
  ssbB Streptococcus sobrinus strain NIDR 6715-7

39.815

95.575

0.381
  ssbB Lactococcus lactis subsp. cremoris KW2

40.566

93.805

0.381
  ssbB/cilA Streptococcus mitis NCTC 12261

37.963

95.575

0.363
  ssbB/cilA Streptococcus pneumoniae TIGR4

37.963

95.575

0.363