Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   P3R60_RS06615 Genome accession   NZ_CP120510
Coordinates   1261748..1263004 (+) Length   418 a.a.
NCBI ID   WP_316606035.1    Uniprot ID   -
Organism   Streptococcus pluranimalium strain SP21-2     
Function   facilitate localization of RecA (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1256748..1268004
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P3R60_RS06595 - 1258249..1259472 (+) 1224 WP_316606032.1 MFS transporter -
  P3R60_RS06600 ruvA 1259482..1260075 (+) 594 WP_218653793.1 Holliday junction branch migration protein RuvA -
  P3R60_RS06605 - 1260112..1260663 (+) 552 WP_316606033.1 DNA-3-methyladenine glycosylase I -
  P3R60_RS06610 - 1260787..1261371 (-) 585 WP_316606034.1 helix-turn-helix transcriptional regulator -
  P3R60_RS06615 cinA 1261748..1263004 (+) 1257 WP_316606035.1 competence/damage-inducible protein A Machinery gene
  P3R60_RS06620 recA 1263148..1264290 (+) 1143 WP_115131052.1 recombinase RecA Machinery gene
  P3R60_RS06625 spx 1264730..1265128 (+) 399 WP_104968717.1 transcriptional regulator Spx -
  P3R60_RS06630 - 1265179..1266309 (-) 1131 WP_316606036.1 N-acetyldiaminopimelate deacetylase -
  P3R60_RS06635 dapD 1266364..1267062 (-) 699 WP_316606037.1 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase -
  P3R60_RS06640 - 1267324..1267581 (-) 258 WP_316606038.1 hypothetical protein -

Sequence

Protein


Download         Length: 418 a.a.        Molecular weight: 44694.04 Da        Isoelectric Point: 4.6303

>NTDB_id=805862 P3R60_RS06615 WP_316606035.1 1261748..1263004(+) (cinA) [Streptococcus pluranimalium strain SP21-2]
MKAELIAVGTEILTGQIVNTNAQYLSEKMAEIGIDVYYQTAVGDNEERLLSVIDMASKRSDLVILCGGLGPTEDDLTKQT
LAKYLGRNLVFDEKANQKLDQFFASRPKYSRTPNNERQAQMVEGSTPIQNITGLAVGGILTVDGVTYVVLPGPPSELKPM
VQEGLVPLLSTSGEQLYSRVLRFFGIGESQLVTVLAEMIEEQTDPTLAPYAKVGEVTLRLSTKAKNQQSADLKLDALEAQ
ILATSDLDNVPLKDHLYGYSEGNSLAQVTVDLLKASGKSVTAAESLTAGLFQSTIANFQGASEIFEGGFVTYSLAQKASI
LGIPEADLKVHGVVSEFTARAMAETTREKVGADLAISLTGVAGPDELEGQPVGTVFIGLASEAGVMVKKVHIGGRSRSDI
RYIAVLHALNMVRQALLA

Nucleotide


Download         Length: 1257 bp        

>NTDB_id=805862 P3R60_RS06615 WP_316606035.1 1261748..1263004(+) (cinA) [Streptococcus pluranimalium strain SP21-2]
ATGAAAGCAGAGTTAATTGCAGTCGGAACAGAAATCTTAACTGGACAAATCGTTAATACCAACGCCCAGTATTTGTCAGA
AAAAATGGCAGAAATCGGTATTGATGTTTACTATCAAACAGCCGTTGGGGATAATGAGGAGAGACTCCTGTCAGTCATCG
ATATGGCTAGTAAACGTAGCGATTTGGTTATTCTTTGTGGTGGCTTGGGACCGACAGAAGATGATTTGACTAAGCAAACA
TTGGCTAAATATTTGGGACGTAACTTAGTTTTTGATGAGAAAGCCAATCAGAAATTGGATCAATTCTTTGCGTCGCGTCC
GAAATACAGCCGCACGCCCAATAATGAACGTCAGGCTCAGATGGTGGAGGGCTCAACACCTATTCAAAACATCACAGGAC
TTGCTGTTGGCGGTATCTTGACGGTTGATGGTGTGACTTATGTCGTTTTACCTGGTCCACCGAGCGAATTGAAGCCTATG
GTACAAGAAGGTTTGGTACCTCTCCTATCCACAAGTGGTGAACAGCTTTATTCCCGCGTTCTTCGCTTCTTTGGTATCGG
TGAAAGCCAGTTGGTGACGGTCTTAGCAGAGATGATTGAAGAGCAGACAGACCCAACGCTTGCACCTTATGCCAAGGTTG
GTGAAGTGACCTTGAGGCTGTCAACCAAGGCGAAAAATCAACAATCAGCTGATTTGAAGTTAGATGCACTAGAAGCGCAA
ATCTTAGCGACATCTGATTTGGATAACGTGCCCCTAAAAGACCATTTGTATGGCTATAGTGAGGGAAATTCTTTAGCGCA
GGTGACGGTTGACTTGTTGAAGGCTTCTGGTAAGTCGGTTACAGCAGCAGAAAGTCTGACAGCAGGGCTCTTTCAGTCGA
CAATTGCTAATTTCCAAGGAGCGTCTGAGATTTTTGAAGGCGGCTTTGTAACCTACAGCTTGGCGCAAAAGGCTTCTATA
CTAGGGATTCCTGAGGCTGACTTAAAGGTGCATGGTGTGGTGAGTGAGTTCACGGCTAGAGCGATGGCTGAGACTACACG
TGAAAAGGTTGGAGCAGATTTAGCGATTTCTCTAACGGGTGTGGCAGGTCCTGATGAGCTTGAGGGTCAGCCAGTTGGTA
CAGTCTTTATAGGCTTAGCCAGTGAAGCGGGTGTCATGGTCAAAAAAGTTCATATCGGAGGTCGTAGTCGTTCAGACATT
CGCTATATTGCTGTCTTGCATGCTTTAAATATGGTTCGACAAGCATTGCTAGCATGA

Domains

Predicted by InterproScan.

Competence-damaged protein (CinA)

(264-416)

Damage-inducible protein CinA KH domain (CinA_KH)

(178-242)

Probable molybdopterin binding domain (MoCF_biosynth)

(5-169)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Streptococcus mitis SK321

70.574

100

0.706
  cinA Streptococcus mutans UA159

70.335

100

0.703
  cinA Streptococcus pneumoniae Rx1

69.856

100

0.699
  cinA Streptococcus pneumoniae R6

69.856

100

0.699
  cinA Streptococcus pneumoniae TIGR4

69.617

100

0.696
  cinA Streptococcus pneumoniae D39

69.617

100

0.696
  cinA Streptococcus mitis NCTC 12261

69.378

100

0.694
  cinA Streptococcus suis isolate S10

55.769

99.522

0.555
  cinA Bacillus subtilis subsp. subtilis str. 168

43.541

100

0.435