Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   P3T75_RS12860 Genome accession   NZ_CP120467
Coordinates   2683507..2684742 (-) Length   411 a.a.
NCBI ID   WP_282461805.1    Uniprot ID   -
Organism   Enterococcus montenegrensis strain CoE-012-22     
Function   facilitate localization of RecA (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2678507..2689742
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P3T75_RS12845 (P3T75_12840) - 2679270..2680214 (-) 945 WP_206902647.1 sugar ABC transporter permease -
  P3T75_RS12850 (P3T75_12845) - 2680589..2682196 (+) 1608 WP_282461804.1 C39 family peptidase -
  P3T75_RS12855 (P3T75_12850) recA 2682248..2683288 (-) 1041 WP_206902671.1 recombinase RecA Machinery gene
  P3T75_RS12860 (P3T75_12855) cinA 2683507..2684742 (-) 1236 WP_282461805.1 competence/damage-inducible protein A Machinery gene
  P3T75_RS12865 (P3T75_12860) pgsA 2684996..2685574 (-) 579 WP_282461806.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  P3T75_RS12870 (P3T75_12865) - 2685607..2686515 (-) 909 WP_282461807.1 helix-turn-helix domain-containing protein -
  P3T75_RS12875 (P3T75_12870) ymfI 2686536..2687261 (-) 726 WP_282461808.1 elongation factor P 5-aminopentanone reductase -
  P3T75_RS12880 (P3T75_12875) yfmH 2687264..2688562 (-) 1299 WP_282462612.1 EF-P 5-aminopentanol modification-associated protein YfmH -

Sequence

Protein


Download         Length: 411 a.a.        Molecular weight: 44749.30 Da        Isoelectric Point: 4.8600

>NTDB_id=805762 P3T75_RS12860 WP_282461805.1 2683507..2684742(-) (cinA) [Enterococcus montenegrensis strain CoE-012-22]
MKAEIIAVGTEILLGQVVNTNATFISEELADLGIEVYYHSVVGDNPARLENLLQIADERSDLVVLCGGLGPTTDDLTKDV
VAKHVGQNLVEDYAGRKELDAFFTKAKREMTPNNLRQVLIFEEGIALPNETGLAIGIFYQSATTAFLLLPGPPSELRPMF
LHHAKPLLEEKFPQTDQLISRVLRFYGIGESKLVSQLADLIEKQTNPTIAPYAKPNEVTLRLTVKAPDKAMGMKLLDETE
AAIKKEVGEYFYGYGEENSLEAVVVKLLQEKNCSITAAESLTAGQFQATLANISGASKVFAGGFVTYAKEQKEKLLQIDA
ALLQEYGVVSEACAKAMAKNARKIIGADYALSFTGVAGPDELEGQPAGTVWIGLASETEVTAHLYHFTRDRAYVRHSAVM
AGLDLLRRAVL

Nucleotide


Download         Length: 1236 bp        

>NTDB_id=805762 P3T75_RS12860 WP_282461805.1 2683507..2684742(-) (cinA) [Enterococcus montenegrensis strain CoE-012-22]
ATGAAAGCAGAAATCATTGCAGTGGGAACAGAAATTCTATTAGGCCAAGTCGTTAATACGAACGCGACTTTTATCTCAGA
AGAATTGGCGGACCTGGGAATTGAGGTCTATTATCATAGCGTGGTAGGGGATAATCCTGCCCGTTTAGAAAACTTGCTGC
AGATAGCAGATGAGCGCAGTGATCTTGTGGTGTTATGTGGTGGTTTGGGGCCGACGACTGATGATTTAACAAAAGACGTG
GTCGCAAAACACGTTGGTCAAAACTTAGTCGAAGATTACGCTGGTCGCAAAGAATTAGATGCTTTTTTTACGAAAGCCAA
ACGGGAAATGACACCGAATAATTTAAGACAGGTACTCATTTTTGAAGAGGGAATTGCCCTACCAAATGAAACGGGTCTTG
CCATTGGCATTTTTTATCAAAGTGCAACGACAGCCTTTTTACTTTTGCCCGGCCCACCTTCAGAATTGCGTCCGATGTTT
TTACACCACGCTAAACCGCTTTTAGAAGAAAAATTTCCTCAAACAGACCAACTGATTTCGCGGGTATTGCGATTTTACGG
CATTGGGGAATCTAAATTGGTGAGCCAGTTAGCTGATTTAATTGAAAAACAAACAAACCCTACGATTGCGCCTTATGCCA
AACCTAATGAAGTTACGCTGCGACTGACAGTTAAGGCACCTGATAAAGCAATGGGCATGAAATTATTAGATGAAACAGAA
GCTGCAATCAAAAAGGAGGTGGGGGAATACTTTTACGGCTACGGTGAAGAAAATTCATTGGAAGCAGTGGTCGTAAAATT
ATTGCAGGAAAAAAATTGCAGTATAACAGCAGCGGAAAGTCTAACGGCAGGACAATTCCAAGCAACCCTCGCCAATATCA
GCGGCGCTTCGAAAGTTTTTGCTGGTGGTTTTGTAACTTATGCAAAAGAGCAAAAAGAAAAACTCTTGCAAATTGATGCA
GCGCTATTGCAAGAGTATGGTGTGGTCAGTGAAGCCTGCGCCAAAGCAATGGCTAAAAATGCCCGAAAAATTATTGGTGC
GGACTACGCATTAAGTTTTACTGGTGTGGCAGGACCAGATGAGCTGGAAGGTCAGCCAGCTGGAACAGTTTGGATTGGTT
TGGCAAGTGAAACAGAGGTTACGGCCCACTTGTATCACTTCACCCGTGATCGCGCCTATGTACGTCATAGTGCAGTTATG
GCGGGCTTAGATTTATTGCGGCGTGCAGTTTTGTAA

Domains

Predicted by InterproScan.

Probable molybdopterin binding domain (MoCF_biosynth)

(5-169)

Competence-damaged protein (CinA)

(258-409)

Damage-inducible protein CinA KH domain (CinA_KH)

(180-253)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Streptococcus mitis NCTC 12261

53.444

100

0.547
  cinA Streptococcus pneumoniae TIGR4

53.207

100

0.545
  cinA Streptococcus pneumoniae D39

52.969

100

0.543
  cinA Streptococcus mitis SK321

53.095

100

0.543
  cinA Streptococcus pneumoniae Rx1

52.732

100

0.54
  cinA Streptococcus pneumoniae R6

52.732

100

0.54
  cinA Streptococcus mutans UA159

52.53

100

0.53
  cinA Bacillus subtilis subsp. subtilis str. 168

47.654

98.54

0.47
  cinA Streptococcus suis isolate S10

42.823

100

0.436