Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   P5V12_RS00370 Genome accession   NZ_CP120416
Coordinates   76578..77789 (-) Length   403 a.a.
NCBI ID   WP_316955254.1    Uniprot ID   A0AA96KFG9
Organism   Teredinibacter sp. KSP-S5-2     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 71578..82789
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P5V12_RS00345 (P5V12_00345) argJ 73254..74474 (+) 1221 WP_316955249.1 bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ -
  P5V12_RS00350 (P5V12_00350) mutT 74478..74873 (+) 396 WP_316955250.1 8-oxo-dGTP diphosphatase MutT -
  P5V12_RS00355 (P5V12_00355) yacG 74887..75042 (-) 156 WP_410483315.1 DNA gyrase inhibitor YacG -
  P5V12_RS00360 (P5V12_00360) coaE 75086..75703 (-) 618 WP_316955252.1 dephospho-CoA kinase -
  P5V12_RS00365 (P5V12_00365) - 75706..76572 (-) 867 WP_316955253.1 A24 family peptidase -
  P5V12_RS00370 (P5V12_00370) pilC 76578..77789 (-) 1212 WP_316955254.1 type II secretion system F family protein Machinery gene
  P5V12_RS00375 (P5V12_00375) pilB 77795..79510 (-) 1716 WP_316955255.1 type IV-A pilus assembly ATPase PilB Machinery gene
  P5V12_RS00380 (P5V12_00380) - 79631..80362 (-) 732 WP_316955256.1 hypothetical protein -
  P5V12_RS00385 (P5V12_00385) - 80462..81022 (-) 561 WP_316955257.1 pilin -
  P5V12_RS00390 (P5V12_00390) nadC 81186..82037 (-) 852 WP_316955258.1 carboxylating nicotinate-nucleotide diphosphorylase -
  P5V12_RS00395 (P5V12_00395) - 82054..82578 (-) 525 WP_316955259.1 TIGR02281 family clan AA aspartic protease -

Sequence

Protein


Download         Length: 403 a.a.        Molecular weight: 43636.22 Da        Isoelectric Point: 9.5382

>NTDB_id=805512 P5V12_RS00370 WP_316955254.1 76578..77789(-) (pilC) [Teredinibacter sp. KSP-S5-2]
MAASVEVFTYKGVDKKGNKVEGEIKSASSSLAKAQLIKQGVRTKTIRKKPKPLFGGGKKKVTPMDIALFTRQMATMMKAG
VPLVQSFDIVAGGTDNTGLRDLIKDIKEDVAAGGGFANALRKKPKYFDDLFCNLVESGEQSGALETMLDRIATYKEKTEQ
LKAKIKKALTYPIAVIIVAIVVTGILLVKVVPQFAETFKGFGADLPAFTLMVLNLSNFAQEYWFIGLISLIAFFVAYGQL
KEKSPQFRAFVDRTSLKVPIVGDIIYQSIVARFARTLSTTFAAGVPLIDALTSVAGATGNIGYEKAVLRVREEVSTGTQL
NVAMTNTGLFPSMLLQMTTIGEESGALDDMLDKSANYYEEAVDNLVDSLTSLLEPMIMSVLGILVGGLMIAMYLPIFQMG
QAI

Nucleotide


Download         Length: 1212 bp        

>NTDB_id=805512 P5V12_RS00370 WP_316955254.1 76578..77789(-) (pilC) [Teredinibacter sp. KSP-S5-2]
ATGGCAGCATCAGTCGAAGTCTTCACCTATAAGGGGGTAGACAAAAAAGGTAATAAGGTTGAGGGCGAAATCAAAAGCGC
GAGCTCCTCCTTGGCCAAAGCTCAGCTTATAAAACAGGGCGTTAGGACCAAAACCATACGCAAAAAGCCCAAACCCCTGT
TCGGCGGAGGCAAGAAAAAAGTTACTCCCATGGACATTGCCTTATTTACCCGGCAAATGGCTACTATGATGAAGGCCGGT
GTTCCACTTGTTCAGAGCTTTGATATTGTTGCCGGTGGTACCGACAACACGGGCTTGAGAGACTTAATCAAGGATATTAA
AGAGGATGTTGCTGCTGGCGGCGGTTTTGCCAATGCGTTGCGTAAAAAGCCTAAATACTTTGACGACCTATTTTGCAACT
TAGTTGAATCTGGTGAACAATCTGGTGCGCTGGAAACCATGCTCGACCGAATTGCGACCTATAAAGAAAAGACGGAGCAA
CTTAAAGCCAAAATCAAAAAAGCACTAACCTATCCTATAGCGGTGATTATAGTCGCCATTGTTGTAACCGGAATCCTATT
GGTAAAAGTCGTACCTCAATTCGCAGAGACATTTAAAGGCTTTGGCGCAGACCTACCGGCCTTTACTTTAATGGTGCTAA
ATCTATCAAACTTCGCACAAGAATACTGGTTTATCGGCCTGATATCATTGATAGCGTTTTTCGTTGCCTATGGGCAGTTA
AAGGAAAAAAGCCCGCAATTTCGTGCTTTTGTCGATAGAACCTCTCTAAAAGTTCCCATTGTCGGAGATATCATCTATCA
ATCGATAGTTGCCCGCTTTGCCCGAACTCTATCAACTACTTTTGCTGCAGGTGTACCATTAATTGATGCTCTCACCTCCG
TGGCCGGAGCGACAGGAAACATCGGCTACGAAAAAGCAGTATTACGTGTCCGAGAAGAGGTCTCTACCGGTACTCAACTG
AACGTTGCCATGACCAATACCGGCCTATTTCCCTCCATGCTATTGCAAATGACCACCATCGGTGAGGAATCTGGCGCCTT
GGATGATATGCTGGATAAATCCGCCAATTACTACGAAGAGGCTGTAGATAACCTGGTGGACAGCCTTACATCACTGCTAG
AACCAATGATTATGTCCGTGCTGGGTATATTAGTAGGTGGATTGATGATCGCCATGTACTTACCCATATTCCAGATGGGT
CAAGCGATATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(69-192)

Type II secretion system (T2SS), protein F (T2SSF)

(273-395)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

63.476

98.511

0.625
  pilC Acinetobacter baylyi ADP1

61.307

98.759

0.605
  pilC Acinetobacter baumannii D1279779

61.461

98.511

0.605
  pilC Legionella pneumophila strain ERS1305867

57.071

98.263

0.561
  pilG Neisseria gonorrhoeae MS11

42.857

99.007

0.424
  pilG Neisseria meningitidis 44/76-A

42.317

98.511

0.417
  pilC Vibrio cholerae strain A1552

41.582

97.27

0.404
  pilC Vibrio campbellii strain DS40M4

40.25

99.256

0.4
  pilC Thermus thermophilus HB27

36.139

100

0.362