NTDB

Overview

Name	pilC	Type	Machinery gene
Locus tag	P2T68_RS05535	Genome accession	NZ_CP120377
Coordinates	1223859..1225067 (-)	Length	402 a.a.
NCBI ID	WP_193690171.1	Uniprot ID	A0A7M2JAD5
Organism	Pseudomonas sp. G11
Function	assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1218859..1230067

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
P2T68_RS05495 (P2T68_05495)	-	1219744..1219917 (-)	174	WP_024073379.1	DUF3094 family protein	-
P2T68_RS05500 (P2T68_05500)	-	1220007..1220636 (-)	630	WP_017845475.1	DUF1780 domain-containing protein	-
P2T68_RS05505 (P2T68_05505)	-	1220737..1221204 (+)	468	WP_277379131.1	FAD/FMN-containing dehydrogenase	-
P2T68_RS05510 (P2T68_05510)	-	1221201..1221890 (+)	690	WP_024073381.1	energy-coupling factor ABC transporter permease	-
P2T68_RS05515 (P2T68_05515)	-	1221967..1222182 (+)	216	WP_003171680.1	hypothetical protein	-
P2T68_RS05520 (P2T68_05520)	yacG	1222179..1222379 (-)	201	WP_017845472.1	DNA gyrase inhibitor YacG	-
P2T68_RS05525 (P2T68_05525)	coaE	1222376..1222999 (-)	624	WP_102624199.1	dephospho-CoA kinase	-
P2T68_RS05530 (P2T68_05530)	pilD	1222996..1223862 (-)	867	WP_069075202.1	A24 family peptidase	Machinery gene
P2T68_RS05535 (P2T68_05535)	pilC	1223859..1225067 (-)	1209	WP_193690171.1	type II secretion system F family protein	Machinery gene
P2T68_RS05540 (P2T68_05540)	-	1225269..1225682 (+)	414	WP_024073385.1	pilin	-
P2T68_RS05545 (P2T68_05545)	-	1225717..1227126 (+)	1410	WP_277379132.1	O-antigen ligase family protein	-
P2T68_RS05555 (P2T68_05555)	-	1227389..1227694 (+)	306	WP_024073387.1	DUF6388 family protein	-
P2T68_RS35160	-	1227719..1227808 (+)	90	Protein_1088	outer membrane lipoprotein carrier protein LolA	-
P2T68_RS05560 (P2T68_05560)	nadC	1227816..1228664 (-)	849	WP_150054127.1	carboxylating nicotinate-nucleotide diphosphorylase	-

Sequence

Protein

Download Length: 402 a.a. Molecular weight: 43305.57 Da Isoelectric Point: 9.9822

                                >NTDB_id=805290 P2T68_RS05535 WP_193690171.1 1223859..1225067(-) (pilC) [Pseudomonas sp. G11]

MDNASRTYAWEGTNRQGHRVSGHTTGHNLALIKAKLRQQGIRPSSVRRQFPGLACLAAPIKPTDIALLTRQLATLLKAGI

PLLQAFDIISDGFESRPMQELLKGLTQDIAAGTALATALRKQPRYFDDLYCNLIAAGEQAGALETLLERVATHLEKSEQL

KARIKKAMTYPIAVLVVASLVSSILLIHVVPQFQNLFAGVDRQLPGFTLHVIGLSTFMQQAWWALALGLGAGFFALRHAY

RVAPGFRQGLDTGLLKAPLAGTLLKKSAVARYARTLSTTFAAGVPLVQALDSVAGAVGNGPYKQAIKHMRHEVSTGMQLN

QSMAASGLFPGMAIQMTAIGEESGTLERMLEKVANHYESEVDNLVDNLTSLMEPLIMVVLGGIVGALVIAMYLPVFQLGT

AF

Nucleotide

Download Length: 1209 bp

                                >NTDB_id=805290 P2T68_RS05535 WP_193690171.1 1223859..1225067(-) (pilC) [Pseudomonas sp. G11]

ATGGACAACGCTTCAAGGACCTACGCGTGGGAAGGCACCAACCGCCAGGGGCACAGGGTGTCCGGGCACACCACGGGCCA

CAACCTCGCCCTGATCAAGGCAAAGCTGCGCCAGCAAGGGATCCGCCCCAGCAGCGTGCGCAGGCAATTCCCCGGCCTGG

CCTGCCTCGCCGCGCCGATCAAACCCACTGACATCGCCCTGCTCACCCGCCAGTTGGCGACCTTGCTGAAAGCCGGCATT

CCTCTGCTGCAAGCCTTCGACATCATCAGCGACGGCTTCGAGAGCCGGCCGATGCAGGAACTGCTCAAGGGGTTGACGCA

GGACATCGCCGCCGGCACCGCACTGGCGACCGCGCTGCGCAAACAGCCACGCTATTTCGATGACCTGTACTGCAACCTGA

TTGCCGCCGGCGAACAGGCCGGGGCATTGGAAACGCTGTTGGAGCGCGTTGCCACTCACCTGGAAAAGAGTGAGCAGCTA

AAGGCGCGAATCAAGAAAGCCATGACCTACCCGATCGCCGTCCTGGTGGTGGCGAGCCTGGTCAGCAGCATCCTGCTGAT

CCACGTAGTGCCGCAATTTCAGAACCTGTTCGCCGGAGTCGACCGACAGTTGCCCGGTTTTACCCTGCACGTCATCGGCC

TGTCCACGTTCATGCAGCAAGCCTGGTGGGCTCTGGCGCTTGGCCTCGGGGCCGGTTTTTTCGCGCTGCGCCACGCCTAT

CGCGTAGCCCCTGGCTTTCGTCAGGGGCTGGATACGGGTTTGTTGAAAGCCCCCTTGGCAGGCACACTGCTGAAGAAATC

GGCCGTGGCACGCTATGCCCGCACGCTTTCCACCACGTTCGCGGCTGGGGTGCCGCTGGTACAGGCATTGGATTCAGTGG

CAGGTGCCGTCGGCAACGGGCCGTACAAGCAGGCGATCAAACATATGCGTCATGAGGTATCCACAGGCATGCAGTTGAAC

CAATCCATGGCCGCCAGCGGTCTCTTTCCAGGCATGGCAATTCAGATGACGGCCATCGGAGAGGAGTCGGGCACACTCGA

GCGCATGCTGGAAAAAGTCGCGAACCACTATGAATCGGAAGTCGACAACCTGGTCGACAACCTCACCAGCCTGATGGAGC

CGCTGATAATGGTGGTGCTGGGGGGCATTGTCGGGGCGCTGGTGATTGCGATGTACCTGCCGGTCTTCCAACTCGGTACA

GCGTTTTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(69-191)

Type II secretion system (T2SS), protein F (T2SSF)

(273-394)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure
AlphaFold DB	A0A7M2JAD5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
pilC	Pseudomonas stutzeri DSM 10701	57.071	98.507	0.562
pilC	Acinetobacter baylyi ADP1	51.759	99.005	0.512
pilC	Acinetobacter baumannii D1279779	49.747	98.507	0.49
pilC	Legionella pneumophila strain ERS1305867	48.99	98.507	0.483
pilC	Vibrio cholerae strain A1552	40.351	99.254	0.4
pilG	Neisseria gonorrhoeae MS11	38.539	98.756	0.381
pilC	Vibrio campbellii strain DS40M4	38.442	99.005	0.381
pilC	Thermus thermophilus HB27	37.656	99.751	0.376
pilG	Neisseria meningitidis 44/76-A	38.035	98.756	0.376

Detailed information NTG0805290