Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA/celA/cilE   Type   Machinery gene
Locus tag   RJW55_RS07590 Genome accession   NZ_CP134473
Coordinates   1620009..1620671 (-) Length   220 a.a.
NCBI ID   WP_043026931.1    Uniprot ID   -
Organism   Streptococcus suis strain TMW_SS028     
Function   dsDNA binding to the cell surface (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1615009..1625671
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RJW55_RS07585 (RJW55_07585) comEC/celB 1617788..1620025 (-) 2238 WP_043026930.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  RJW55_RS07590 (RJW55_07590) comEA/celA/cilE 1620009..1620671 (-) 663 WP_043026931.1 helix-hairpin-helix domain-containing protein Machinery gene
  RJW55_RS07595 (RJW55_07595) - 1620738..1621484 (-) 747 WP_043026932.1 1-acyl-sn-glycerol-3-phosphate acyltransferase -
  RJW55_RS07600 (RJW55_07600) - 1621633..1623078 (+) 1446 WP_043026933.1 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L- lysine ligase -
  RJW55_RS07605 (RJW55_07605) - 1623544..1624329 (+) 786 WP_014636900.1 ABC transporter ATP-binding protein -
  RJW55_RS07610 (RJW55_07610) - 1624342..1625271 (+) 930 WP_043026846.1 ABC transporter substrate-binding protein -

Sequence

Protein


Download         Length: 220 a.a.        Molecular weight: 23424.00 Da        Isoelectric Point: 4.0498

>NTDB_id=803824 RJW55_RS07590 WP_043026931.1 1620009..1620671(-) (comEA/celA/cilE) [Streptococcus suis strain TMW_SS028]
MDTIKTYIEMLKEYKWQIALPAVAGLLMATFLIFSQPAKSDQTGLTDFSQPQQSSSSQEQLEEVSTEESEESSQLVVDVK
GAVEKPGLYTLEAGARVNDAVEAAGGLTSQADPKSINLAQKLSDEAVVYVASKDENISVVASTTASSAMSQDEKNTSLVN
LNTATEADLQTISGIGAKRAADIIAYREANGGFKSVDDLNNVSGIGDKTMESIRPYVTVD

Nucleotide


Download         Length: 663 bp        

>NTDB_id=803824 RJW55_RS07590 WP_043026931.1 1620009..1620671(-) (comEA/celA/cilE) [Streptococcus suis strain TMW_SS028]
ATGGATACGATTAAAACTTATATAGAAATGCTTAAAGAATACAAGTGGCAAATTGCTCTGCCAGCAGTGGCTGGCTTGCT
AATGGCGACGTTCTTAATATTCAGCCAACCAGCTAAGTCTGATCAGACAGGCCTGACTGATTTTTCACAGCCACAGCAAA
GTTCAAGTAGTCAGGAGCAGCTTGAAGAAGTCAGTACAGAAGAAAGTGAAGAGTCGAGCCAGCTGGTCGTTGATGTCAAA
GGAGCGGTGGAAAAACCAGGGCTGTATACCTTAGAAGCTGGTGCGCGTGTCAATGATGCAGTAGAGGCAGCTGGCGGCTT
GACCAGTCAGGCAGATCCCAAGTCTATCAATCTGGCTCAGAAGCTCAGCGACGAAGCGGTAGTCTATGTGGCCAGCAAGG
ATGAAAATATCTCGGTGGTGGCCAGCACGACTGCCAGCTCTGCTATGTCCCAAGACGAAAAAAATACCAGTCTAGTCAAT
CTCAATACGGCGACCGAGGCTGACCTGCAGACCATTTCGGGTATCGGTGCCAAGCGGGCGGCGGACATTATCGCCTATCG
TGAGGCCAACGGTGGCTTCAAGTCGGTGGATGACCTCAACAATGTTTCGGGCATCGGCGACAAGACCATGGAAAGTATTC
GGCCTTATGTCACGGTCGATTAA

Domains

Predicted by InterProScan.

SLBB domain (SLBB)

(76-130)

Helix-hairpin-helix motif (HHH_3)

(155-218)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA/celA/cilE Streptococcus mitis NCTC 12261

46.256

100

0.477
  comEA/celA/cilE Streptococcus pneumoniae TIGR4

46.256

100

0.477
  comEA/celA/cilE Streptococcus mitis SK321

46.847

100

0.473
  comEA/celA/cilE Streptococcus pneumoniae Rx1

47.032

99.545

0.468
  comEA/celA/cilE Streptococcus pneumoniae D39

47.032

99.545

0.468
  comEA/celA/cilE Streptococcus pneumoniae R6

47.032

99.545

0.468
  comEA Streptococcus thermophilus LMD-9

59.877

73.636

0.441
  comEA Lactococcus lactis subsp. cremoris KW2

38.71

98.636

0.382
  comEA Bacillus subtilis subsp. subtilis str. 168

38.756

95

0.368