Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   P3U61_RS12025 Genome accession   NZ_CP120150
Coordinates   2542478..2542984 (-) Length   168 a.a.
NCBI ID   WP_014614920.1    Uniprot ID   A0A161W350
Organism   Staphylococcus pseudintermedius strain Dog029_1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2537478..2547984
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P3U61_RS12005 (P3U61_12005) - 2538694..2540685 (+) 1992 WP_096533761.1 catalase -
  P3U61_RS12010 (P3U61_12010) - 2540899..2541660 (-) 762 WP_308412412.1 Abi family protein -
  P3U61_RS12015 (P3U61_12015) - 2541629..2541991 (-) 363 WP_233510593.1 hypothetical protein -
  P3U61_RS12020 (P3U61_12020) rpsR 2542182..2542424 (-) 243 WP_014614919.1 30S ribosomal protein S18 -
  P3U61_RS12025 (P3U61_12025) ssbA 2542478..2542984 (-) 507 WP_014614920.1 single-stranded DNA-binding protein Machinery gene
  P3U61_RS12030 (P3U61_12030) rpsF 2543007..2543303 (-) 297 WP_014614921.1 30S ribosomal protein S6 -
  P3U61_RS12035 (P3U61_12035) sbi 2543640..2545160 (+) 1521 WP_140240678.1 Ig-binding surface protein Sbi/SpsK -
  P3U61_RS12040 (P3U61_12040) - 2545214..2546023 (-) 810 WP_014614923.1 ABC transporter permease subunit -
  P3U61_RS12045 (P3U61_12045) - 2546016..2546951 (-) 936 WP_140240679.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 168 a.a.        Molecular weight: 18738.42 Da        Isoelectric Point: 5.1957

>NTDB_id=803823 P3U61_RS12025 WP_014614920.1 2542478..2542984(-) (ssbA) [Staphylococcus pseudintermedius strain Dog029_1]
MLNRVVLVGRLTKDPEYRTTPSGVSVATFTLAVNRTFTNAQGEREADFINCVVFRKQAENVNNFLFKGSLAGVDGRLQSR
SYENQEGRRVFVTEVVCDSVQFLEPKSQNQRHANQNQGNQFDSYGQGFGGQQQGQNSSYQNNHQQPANDNPFANANGPID
ISDDDLPF

Nucleotide


Download         Length: 507 bp        

>NTDB_id=803823 P3U61_RS12025 WP_014614920.1 2542478..2542984(-) (ssbA) [Staphylococcus pseudintermedius strain Dog029_1]
ATGCTTAATAGAGTCGTATTAGTAGGTCGCTTAACTAAAGATCCAGAATACAGAACGACACCCTCAGGCGTAAGTGTAGC
GACATTTACCTTAGCGGTTAATCGTACATTTACGAATGCGCAAGGGGAACGTGAAGCAGACTTCATTAACTGCGTTGTTT
TCCGTAAACAAGCAGAAAATGTAAACAACTTTTTGTTTAAAGGAAGTCTCGCTGGCGTTGACGGTCGCTTACAATCACGC
AGTTACGAAAACCAAGAAGGCCGACGTGTATTCGTCACTGAAGTGGTATGTGATAGTGTTCAATTCCTTGAGCCAAAATC
ACAAAACCAACGTCACGCGAATCAAAACCAAGGCAATCAATTCGACAGCTACGGTCAAGGATTCGGTGGACAACAACAAG
GCCAAAATTCGTCTTATCAAAACAATCATCAGCAACCAGCTAACGATAACCCATTTGCGAATGCGAACGGTCCTATCGAT
ATTAGCGATGATGATTTACCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A161W350

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

64.773

100

0.679
  ssb Latilactobacillus sakei subsp. sakei 23K

56.14

100

0.571
  ssbB Bacillus subtilis subsp. subtilis str. 168

58.182

65.476

0.381