Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   RI578_RS26425 Genome accession   NZ_CP134203
Coordinates   5756650..5757255 (+) Length   201 a.a.
NCBI ID   WP_193776311.1    Uniprot ID   -
Organism   Streptomyces sp. BB1-1-1     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 5751650..5762255
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RI578_RS26395 (RI578_26395) - 5751689..5752183 (+) 495 WP_310873399.1 HD domain-containing protein -
  RI578_RS26400 (RI578_26400) - 5752226..5753422 (-) 1197 WP_310873400.1 acyltransferase family protein -
  RI578_RS26405 (RI578_26405) - 5754087..5754281 (+) 195 WP_055416925.1 hypothetical protein -
  RI578_RS26420 (RI578_26420) tig 5754919..5756325 (+) 1407 WP_310873401.1 trigger factor -
  RI578_RS26425 (RI578_26425) clpP 5756650..5757255 (+) 606 WP_193776311.1 ATP-dependent Clp protease proteolytic subunit Regulator
  RI578_RS26430 (RI578_26430) clpP 5757380..5758060 (+) 681 WP_310873402.1 ATP-dependent Clp protease proteolytic subunit Regulator
  RI578_RS26435 (RI578_26435) clpX 5758242..5759528 (+) 1287 WP_121747006.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator
  RI578_RS26440 (RI578_26440) - 5759602..5760573 (-) 972 WP_310873403.1 hypothetical protein -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 21240.16 Da        Isoelectric Point: 4.6747

>NTDB_id=802693 RI578_RS26425 WP_193776311.1 5756650..5757255(+) (clpP) [Streptomyces sp. BB1-1-1]
MPSAAGEPSIGGGLGDQVYNRLLGERIIFLGQPVDDDIANKITAQLLLLAADPDKDIFLYINSPGGSITAGMAIYDTMQF
IKNDVVTIAMGLAASMGQFLLSAGTPGKRFALPNAEILIHQPSAGLAGSASDIKIHAERLLHTKKRMAELTSQHTGQTIE
QITRDSDRDRWFDAFEAKEYGLIDDVIPTAAGMPGGGGTGA

Nucleotide


Download         Length: 606 bp        

>NTDB_id=802693 RI578_RS26425 WP_193776311.1 5756650..5757255(+) (clpP) [Streptomyces sp. BB1-1-1]
ATGCCCTCCGCCGCCGGCGAGCCCTCCATCGGTGGTGGCCTCGGCGACCAGGTCTACAACCGGCTGCTCGGCGAGCGGAT
CATCTTCCTCGGCCAGCCGGTCGACGACGACATCGCCAACAAGATCACCGCACAGCTGCTGCTCCTTGCCGCCGACCCGG
ACAAGGACATCTTCCTGTACATCAACAGCCCCGGCGGCTCGATCACGGCCGGCATGGCGATCTACGACACCATGCAGTTC
ATCAAGAACGACGTGGTGACGATCGCGATGGGGCTGGCGGCCTCGATGGGGCAGTTCCTGCTCAGCGCGGGCACCCCGGG
CAAGCGCTTCGCGCTCCCGAACGCCGAGATCCTGATCCACCAGCCCTCCGCCGGTCTGGCCGGCTCCGCCTCGGACATCA
AGATCCACGCCGAGCGGCTGCTGCACACCAAGAAGCGCATGGCGGAGCTGACGTCCCAGCACACCGGTCAGACGATCGAG
CAGATCACGCGCGACTCGGACCGCGACCGCTGGTTCGACGCCTTCGAGGCCAAGGAGTACGGCCTCATCGACGACGTCAT
CCCCACGGCCGCCGGCATGCCGGGCGGCGGCGGCACGGGGGCCTGA

Domains

Predicted by InterProScan.

Clp protease (CLP_protease)

(16-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Bacillus subtilis subsp. subtilis str. 168

59.064

85.075

0.502
  clpP Lactococcus lactis subsp. cremoris KW2

53.261

91.542

0.488
  clpP Streptococcus mutans UA159

56.069

86.07

0.483
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

52.717

91.542

0.483
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

52.432

92.04

0.483
  clpP Streptococcus pyogenes MGAS315

53.179

86.07

0.458
  clpP Streptococcus pyogenes JRS4

53.179

86.07

0.458
  clpP Streptococcus thermophilus LMG 18311

52.023

86.07

0.448
  clpP Streptococcus thermophilus LMD-9

52.023

86.07

0.448
  clpP Streptococcus pneumoniae Rx1

50.867

86.07

0.438
  clpP Streptococcus pneumoniae D39

50.867

86.07

0.438
  clpP Streptococcus pneumoniae R6

50.867

86.07

0.438
  clpP Streptococcus pneumoniae TIGR4

50.867

86.07

0.438