Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   P0D81_RS14315 Genome accession   NZ_CP119159
Coordinates   2884085..2884543 (-) Length   152 a.a.
NCBI ID   WP_002365911.1    Uniprot ID   Q8VT46
Organism   Enterococcus faecalis strain GENOMIC22-006     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
ICE 2853345..2899712 2884085..2884543 within 0


Gene organization within MGE regions


Location: 2853345..2899712
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P0D81_RS14155 (P0D81_14155) - 2853689..2854861 (+) 1173 WP_000195429.1 IS256-like element IS256 family transposase -
  P0D81_RS14160 (P0D81_14160) - 2854845..2855750 (-) 906 WP_275527505.1 cysteine peptidase family C39 domain-containing protein -
  P0D81_RS14165 (P0D81_14165) - 2855762..2858134 (-) 2373 WP_250374032.1 type 2 lanthipeptide synthetase LanM family protein -
  P0D81_RS14170 (P0D81_14170) - 2858441..2859613 (+) 1173 WP_000195429.1 IS256-like element IS256 family transposase -
  P0D81_RS14175 (P0D81_14175) - 2859791..2860969 (-) 1179 WP_000997695.1 IS256-like element ISEf1 family transposase -
  P0D81_RS14180 (P0D81_14180) - 2861067..2861420 (-) 354 WP_275527506.1 hypothetical protein -
  P0D81_RS14185 (P0D81_14185) cylL-S 2861481..2861672 (-) 192 WP_002358181.1 lanthipeptide cytolysin subunit CylL-S -
  P0D81_RS14190 (P0D81_14190) cylL-L 2861706..2861912 (-) 207 WP_002358485.1 lanthipeptide cytolysin subunit CylL-L -
  P0D81_RS14195 (P0D81_14195) cylR2 2862316..2862516 (+) 201 WP_002370931.1 cytolysin regulator CylR2 -
  P0D81_RS14200 (P0D81_14200) - 2862854..2863168 (-) 315 WP_002403043.1 hypothetical protein -
  P0D81_RS14205 (P0D81_14205) - 2863341..2863985 (-) 645 WP_002377952.1 IS6 family transposase -
  P0D81_RS14210 (P0D81_14210) bsh 2864209..2865183 (+) 975 WP_002355428.1 choloylglycine hydrolase -
  P0D81_RS14215 (P0D81_14215) - 2865852..2866460 (-) 609 Protein_2799 IS6 family transposase -
  P0D81_RS14220 (P0D81_14220) - 2866492..2866677 (-) 186 WP_002358660.1 hypothetical protein -
  P0D81_RS14225 (P0D81_14225) - 2866767..2867036 (+) 270 Protein_2801 LPXTG cell wall anchor domain-containing protein -
  P0D81_RS14230 (P0D81_14230) - 2867164..2868102 (+) 939 WP_002370935.1 2-dehydropantoate 2-reductase -
  P0D81_RS14235 (P0D81_14235) - 2868128..2869165 (+) 1038 WP_002355369.1 PTS sugar transporter subunit IIC -
  P0D81_RS14240 (P0D81_14240) - 2869470..2870364 (-) 895 Protein_2804 IS256 family transposase -
  P0D81_RS14245 (P0D81_14245) - 2870485..2871129 (+) 645 WP_002377952.1 IS6 family transposase -
  P0D81_RS14250 (P0D81_14250) - 2871320..2871595 (-) 276 WP_002360769.1 type II toxin-antitoxin system YafQ family toxin -
  P0D81_RS14255 (P0D81_14255) - 2871588..2871854 (-) 267 WP_002369771.1 type II toxin-antitoxin system RelB/DinJ family antitoxin -
  P0D81_RS14260 (P0D81_14260) - 2871965..2872549 (-) 585 WP_002377949.1 thermonuclease family protein -
  P0D81_RS14265 (P0D81_14265) - 2872573..2872989 (-) 417 WP_010710134.1 single-stranded DNA-binding protein -
  P0D81_RS14270 (P0D81_14270) - 2873065..2873313 (-) 249 WP_002360773.1 DUF3850 domain-containing protein -
  P0D81_RS14275 (P0D81_14275) - 2873326..2873826 (-) 501 WP_002360775.1 DnaJ domain-containing protein -
  P0D81_RS14280 (P0D81_14280) - 2873859..2874125 (-) 267 WP_002377947.1 hypothetical protein -
  P0D81_RS14285 (P0D81_14285) - 2874717..2875205 (-) 489 WP_010710133.1 hypothetical protein -
  P0D81_RS14290 (P0D81_14290) - 2875211..2875996 (-) 786 WP_002360778.1 replication-relaxation family protein -
  P0D81_RS14295 (P0D81_14295) - 2876519..2878777 (-) 2259 WP_002406545.1 TraM recognition domain-containing protein -
  P0D81_RS14300 (P0D81_14300) - 2878764..2881115 (-) 2352 WP_174097020.1 hypothetical protein -
  P0D81_RS14305 (P0D81_14305) - 2881133..2881531 (-) 399 WP_002360784.1 hypothetical protein -
  P0D81_RS14310 (P0D81_14310) - 2881488..2883980 (-) 2493 WP_275527507.1 ATP-binding protein -
  P0D81_RS14315 (P0D81_14315) ssb 2884085..2884543 (-) 459 WP_002365911.1 single-stranded DNA-binding protein Machinery gene
  P0D81_RS14320 (P0D81_14320) - 2884633..2885115 (-) 483 WP_002360790.1 hypothetical protein -
  P0D81_RS14325 (P0D81_14325) - 2885147..2885536 (-) 390 WP_002360791.1 TcpE family conjugal transfer membrane protein -
  P0D81_RS14330 (P0D81_14330) - 2885536..2885796 (-) 261 WP_010706916.1 hypothetical protein -
  P0D81_RS14335 (P0D81_14335) - 2885801..2886835 (-) 1035 WP_174080456.1 conjugal transfer protein -
  P0D81_RS14340 (P0D81_14340) - 2886828..2887142 (-) 315 WP_002360796.1 hypothetical protein -
  P0D81_RS14345 (P0D81_14345) - 2887142..2887558 (-) 417 WP_002387762.1 thioredoxin domain-containing protein -
  P0D81_RS14350 (P0D81_14350) - 2887542..2888159 (-) 618 WP_002379926.1 hypothetical protein -
  P0D81_RS14355 (P0D81_14355) - 2888162..2889433 (-) 1272 WP_002409353.1 CHAP domain-containing protein -
  P0D81_RS14360 (P0D81_14360) - 2889459..2890319 (-) 861 WP_010710128.1 LPXTG cell wall anchor domain-containing protein -
  P0D81_RS14365 (P0D81_14365) - 2890339..2891217 (-) 879 WP_002377931.1 hypothetical protein -
  P0D81_RS14370 (P0D81_14370) - 2891228..2891488 (-) 261 WP_002370667.1 hypothetical protein -
  P0D81_RS14375 (P0D81_14375) - 2891634..2892020 (-) 387 WP_002364326.1 hypothetical protein -
  P0D81_RS14380 (P0D81_14380) prgU 2892042..2892398 (-) 357 WP_010714280.1 pheromone response system RNA-binding regulator PrgU -
  P0D81_RS14385 (P0D81_14385) - 2892460..2896377 (-) 3918 WP_174087319.1 LPXTG-anchored aggregation substance -
  P0D81_RS17150 - 2897449..2897804 (-) 356 Protein_2834 sigma-70 family RNA polymerase sigma factor -
  P0D81_RS14390 (P0D81_14390) - 2898362..2898763 (+) 402 WP_002358449.1 sigma-70 family RNA polymerase sigma factor -
  P0D81_RS14395 (P0D81_14395) - 2898757..2899002 (+) 246 WP_002358448.1 helix-turn-helix domain-containing protein -
  P0D81_RS14400 (P0D81_14400) - 2899327..2899547 (-) 221 Protein_2837 hypothetical protein -

Sequence

Protein


Download         Length: 152 a.a.        Molecular weight: 17179.08 Da        Isoelectric Point: 4.6511

>NTDB_id=797938 P0D81_RS14315 WP_002365911.1 2884085..2884543(-) (ssb) [Enterococcus faecalis strain GENOMIC22-006]
MINNVTLVGRLTKDPDLRYTQSGTAVGQFTLAINRNFTNANNEREADFINCVIWRKAAESLANYATKGTLIGLTGRIQTR
NYENQQGQRIYVTEVVTESFQLLESREVNEQRKEQATGKATFDKQSMDKPDPLDPFSPENSIVDISDNDLPF

Nucleotide


Download         Length: 459 bp        

>NTDB_id=797938 P0D81_RS14315 WP_002365911.1 2884085..2884543(-) (ssb) [Enterococcus faecalis strain GENOMIC22-006]
TTGATTAATAACGTTACATTAGTTGGACGATTAACCAAAGACCCAGATTTAAGGTATACGCAAAGTGGAACAGCCGTAGG
TCAATTTACGTTGGCCATTAATCGCAACTTTACCAATGCTAACAATGAAAGGGAAGCAGATTTTATCAACTGTGTTATTT
GGCGGAAAGCTGCAGAGTCATTAGCAAATTATGCAACAAAAGGGACTCTGATCGGTTTAACTGGTCGCATTCAAACAAGA
AACTATGAGAATCAACAAGGCCAGCGTATTTATGTAACTGAGGTTGTCACAGAAAGCTTCCAACTATTAGAATCAAGAGA
AGTAAACGAGCAACGAAAAGAACAGGCTACAGGTAAAGCTACGTTTGATAAACAGTCAATGGATAAACCTGATCCTCTGG
ATCCATTTTCGCCAGAAAATAGCATAGTGGATATTTCTGATAATGACCTGCCGTTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q8VT46

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

56.471

100

0.632
  ssbA Bacillus subtilis subsp. subtilis str. 168

47.283

100

0.572
  ssbB Bacillus subtilis subsp. subtilis str. 168

56.604

69.737

0.395
  ssbB/cilA Streptococcus mitis NCTC 12261

50

76.316

0.382
  ssbB Streptococcus sobrinus strain NIDR 6715-7

53.774

69.737

0.375
  ssbB/cilA Streptococcus pneumoniae TIGR4

49.138

76.316

0.375
  ssbB/cilA Streptococcus pneumoniae Rx1

48.276

76.316

0.368
  ssbB/cilA Streptococcus pneumoniae D39

48.276

76.316

0.368
  ssbB/cilA Streptococcus pneumoniae R6

48.276

76.316

0.368
  ssbB/cilA Streptococcus mitis SK321

48.276

76.316

0.368