Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   PWO50_RS02880 Genome accession   NZ_CP118914
Coordinates   644271..645500 (+) Length   409 a.a.
NCBI ID   WP_210797575.1    Uniprot ID   -
Organism   Pseudoalteromonas ostreae strain hOe-125     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 639271..650500
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PWO50_RS02860 ampD 640134..640676 (-) 543 WP_210797579.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -
  PWO50_RS02865 nadC 641058..641903 (+) 846 WP_210797578.1 carboxylating nicotinate-nucleotide diphosphorylase -
  PWO50_RS02870 pilE 642432..642896 (+) 465 WP_210797577.1 pilin Machinery gene
  PWO50_RS02875 - 643225..644268 (+) 1044 WP_228732993.1 O-antigen ligase family protein -
  PWO50_RS02880 pilC 644271..645500 (+) 1230 WP_210797575.1 type II secretion system F family protein Machinery gene
  PWO50_RS02885 pilD 646095..646994 (+) 900 WP_210797574.1 A24 family peptidase Machinery gene
  PWO50_RS02890 coaE 646996..647631 (+) 636 WP_210797573.1 dephospho-CoA kinase -
  PWO50_RS02895 pilB 647768..649447 (+) 1680 WP_210797572.1 type IV-A pilus assembly ATPase PilB Machinery gene
  PWO50_RS02900 yacG 649515..649745 (+) 231 WP_210797571.1 DNA gyrase inhibitor YacG -

Sequence

Protein


Download         Length: 409 a.a.        Molecular weight: 44419.47 Da        Isoelectric Point: 9.5445

>NTDB_id=796286 PWO50_RS02880 WP_210797575.1 644271..645500(+) (pilC) [Pseudoalteromonas ostreae strain hOe-125]
MAKQPDKKGFDTFEWVGVSARGKRLEGEMTGASIALVKAQLRKQGITPSKVKRKAKPLFGIQNIQKITPKDIALVTRQIA
TMLMAGVPLIQSIEMIGTGSTNKSVTKLMETIGDEVKAGGTLSNALRKHPRYFDDLYCDLVASGEQSGALDKIFDRVALY
KEKSEALKSKIKKAMFYPIAVLVVALIVTSILLIFVVPQFQDIFAGFGAELPVFTLMVIGISEFMQEYWWIMLIAVVGFG
WAYKEALLKSKKLRDANDHAILKLPVIGMILNKAAVARYARTLSTTFAAGVPLVDALDSAAGASGNAVYRYAILDIKAEV
SSGNQMNWAMRNSKIFPDMVIQMVAIGEESGSLDGMLAKVATIYEQEVDDAVDGLSSLLEPLIMAVLGVLVGGLIIAMYL
PIFQLGSVI

Nucleotide


Download         Length: 1230 bp        

>NTDB_id=796286 PWO50_RS02880 WP_210797575.1 644271..645500(+) (pilC) [Pseudoalteromonas ostreae strain hOe-125]
ATGGCAAAGCAACCGGACAAAAAAGGATTTGATACTTTTGAATGGGTCGGCGTGAGTGCTCGCGGGAAGCGCCTTGAAGG
CGAAATGACAGGCGCAAGTATAGCTTTAGTCAAAGCCCAATTACGTAAACAAGGTATCACCCCCTCAAAAGTAAAACGTA
AAGCAAAACCGCTGTTTGGTATTCAAAATATTCAAAAAATAACCCCCAAAGATATTGCGTTAGTTACGCGGCAAATTGCC
ACTATGCTAATGGCGGGCGTGCCCCTTATCCAATCAATTGAAATGATTGGCACTGGCTCGACTAATAAAAGCGTTACTAA
GCTAATGGAGACCATTGGCGATGAAGTAAAAGCTGGTGGTACTTTATCTAACGCACTGCGTAAACACCCTCGTTATTTTG
ATGACTTATATTGTGATTTAGTTGCCTCTGGTGAACAATCGGGTGCGCTGGATAAAATATTCGACCGTGTTGCTCTTTAT
AAAGAAAAGTCCGAAGCGCTAAAGTCAAAAATTAAAAAAGCGATGTTCTATCCCATTGCTGTATTGGTCGTGGCTTTAAT
TGTTACTTCTATCCTACTTATTTTTGTTGTGCCACAGTTCCAAGATATTTTTGCCGGCTTTGGAGCAGAACTCCCTGTCT
TTACTTTAATGGTGATTGGTATATCTGAGTTTATGCAAGAGTATTGGTGGATAATGCTCATTGCAGTCGTTGGCTTTGGC
TGGGCTTACAAAGAAGCACTGCTAAAAAGTAAAAAACTACGCGATGCTAACGACCATGCTATTTTGAAGCTCCCAGTAAT
TGGTATGATTTTAAATAAAGCGGCGGTGGCGCGCTATGCCCGTACGCTTTCGACCACTTTTGCAGCAGGTGTTCCTTTAG
TTGATGCATTGGATTCTGCTGCTGGGGCTTCTGGTAATGCGGTTTATCGTTATGCTATTTTAGATATCAAAGCTGAGGTA
AGCTCTGGTAATCAAATGAACTGGGCAATGCGTAATTCTAAAATATTCCCCGATATGGTGATCCAAATGGTCGCCATTGG
TGAAGAGTCAGGCTCTTTAGATGGCATGCTAGCAAAAGTCGCCACTATTTATGAGCAAGAAGTTGATGATGCGGTAGATG
GTCTATCAAGCTTATTAGAGCCGCTTATTATGGCGGTGCTCGGCGTGTTAGTTGGTGGTTTGATCATTGCTATGTACTTA
CCTATTTTCCAACTTGGGTCGGTTATATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(280-401)

Type II secretion system (T2SS), protein F (T2SSF)

(76-198)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

62.972

97.066

0.611
  pilC Acinetobacter baumannii D1279779

56.281

97.311

0.548
  pilC Acinetobacter baylyi ADP1

55.779

97.311

0.543
  pilC Legionella pneumophila strain ERS1305867

55.276

97.311

0.538
  pilC Vibrio cholerae strain A1552

44.169

98.533

0.435
  pilG Neisseria gonorrhoeae MS11

43.112

95.844

0.413
  pilG Neisseria meningitidis 44/76-A

43.112

95.844

0.413
  pilC Vibrio campbellii strain DS40M4

41.75

97.8

0.408