Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   PWO50_RS02885 Genome accession   NZ_CP118914
Coordinates   646095..646994 (+) Length   299 a.a.
NCBI ID   WP_210797574.1    Uniprot ID   -
Organism   Pseudoalteromonas ostreae strain hOe-125     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 641095..651994
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PWO50_RS02870 pilE 642432..642896 (+) 465 WP_210797577.1 pilin Machinery gene
  PWO50_RS02875 - 643225..644268 (+) 1044 WP_228732993.1 O-antigen ligase family protein -
  PWO50_RS02880 pilC 644271..645500 (+) 1230 WP_210797575.1 type II secretion system F family protein Machinery gene
  PWO50_RS02885 pilD 646095..646994 (+) 900 WP_210797574.1 A24 family peptidase Machinery gene
  PWO50_RS02890 coaE 646996..647631 (+) 636 WP_210797573.1 dephospho-CoA kinase -
  PWO50_RS02895 pilB 647768..649447 (+) 1680 WP_210797572.1 type IV-A pilus assembly ATPase PilB Machinery gene
  PWO50_RS02900 yacG 649515..649745 (+) 231 WP_210797571.1 DNA gyrase inhibitor YacG -
  PWO50_RS02905 - 649844..651016 (-) 1173 WP_210797664.1 divalent metal cation transporter -
  PWO50_RS02910 raiA 651210..651566 (-) 357 WP_145235189.1 ribosome-associated translation inhibitor RaiA -

Sequence

Protein


Download         Length: 299 a.a.        Molecular weight: 33244.86 Da        Isoelectric Point: 6.8417

>NTDB_id=796287 PWO50_RS02885 WP_210797574.1 646095..646994(+) (pilD) [Pseudoalteromonas ostreae strain hOe-125]
MQNFFLDIITVMQSQLWFYLLTVGLVSLCIGSFLNVVIYRLPIMMQREWQTECRVLLADDLKPTKADNTEAELNLVKPNS
TCPKCKTAIKPWQNIPVISWLLLKGRCASCSNPISVRYPIVEMLTAILSLIVAYTFGATEQSLLYILITWLLVTLTFIDI
DHMLLPDQLTLPLLWLALIASVMGITILPTDAIIGAACGYLSLWSVFWLFKLITGKEGMGYGDFKLLAVFGALLGWQSLL
TIVLLSSVVGAIIGIALLSIQGKDKATPIPFGPYLAIAGWVTLLWGTQIQVFYFNLLGY

Nucleotide


Download         Length: 900 bp        

>NTDB_id=796287 PWO50_RS02885 WP_210797574.1 646095..646994(+) (pilD) [Pseudoalteromonas ostreae strain hOe-125]
ATGCAAAATTTCTTTCTTGATATAATCACAGTAATGCAAAGCCAATTATGGTTTTATTTACTCACTGTTGGCTTAGTGAG
CCTGTGTATTGGCAGTTTTTTGAATGTAGTTATTTACCGGCTGCCGATAATGATGCAGCGTGAATGGCAAACAGAATGCC
GTGTTTTACTGGCTGACGATTTAAAACCTACAAAAGCTGATAATACAGAAGCTGAATTAAATCTAGTAAAGCCCAACTCG
ACCTGCCCAAAATGCAAAACGGCCATTAAGCCTTGGCAAAACATTCCTGTTATTAGCTGGTTATTGCTAAAAGGTCGCTG
CGCCAGTTGCAGTAACCCAATCTCAGTACGATACCCAATTGTTGAAATGCTTACTGCTATTTTAAGTTTAATAGTGGCCT
ACACTTTTGGCGCGACTGAGCAATCACTACTATATATTTTAATTACTTGGCTGCTTGTTACCCTGACCTTTATTGATATT
GACCATATGCTGCTACCCGATCAACTCACCTTACCTTTACTCTGGCTAGCATTAATTGCCTCGGTAATGGGCATCACTAT
CTTACCTACTGATGCGATTATTGGTGCAGCTTGTGGTTACTTAAGCCTTTGGAGCGTATTTTGGCTGTTTAAACTGATCA
CCGGGAAAGAAGGTATGGGCTACGGTGATTTTAAATTACTGGCGGTATTTGGCGCATTGCTTGGCTGGCAATCATTACTC
ACCATTGTTTTATTATCAAGTGTAGTGGGCGCTATTATTGGTATCGCATTATTGAGTATTCAAGGCAAAGATAAAGCCAC
GCCAATTCCATTTGGGCCTTATTTAGCCATTGCCGGTTGGGTTACTTTGTTATGGGGCACACAAATCCAAGTATTTTATT
TTAATTTGTTAGGTTATTAA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(26-136)

Type IV leader peptidase family (Peptidase_A24)

(147-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Acinetobacter baumannii D1279779

53.31

95.987

0.512
  pilD Acinetobacter nosocomialis M2

52.595

96.656

0.508
  pilD Vibrio cholerae strain A1552

52.837

94.314

0.498
  pilD Vibrio campbellii strain DS40M4

51.736

96.321

0.498
  pilD Neisseria gonorrhoeae MS11

44.574

86.288

0.385